MeShClust: an intelligent tool for clustering DNA sequences

viruSITE—integrated database for viral genomics

(2016) Matej Stano et al.   Database-The Journal of Biological Databases and Curation

A Novel Method to Predict Genomic Islands Based on Mean Shift Clustering Algorithm

(2016) Daniel M. de Brito et al.   PLoS One

Alignment-free Transcriptomic and Metatranscriptomic Comparison Using Sequencing Signatures with Variable Length Markov Chains

(2016) Weinan Liao et al.   Scientific Reports

Clustering of reads with alignment-free measures and quality values

(2015) Matteo Comin et al.   Algorithms for Molecular Biology

Starcode: sequence clustering based on all-pairs search

(2015) Eduard Zorita et al.   BIOINFORMATICS

Red: an intelligent, rapid, accurate tool for detecting repeats de-novo on the genomic scale

(2015) Hani Z. Girgis   BMC BIOINFORMATICS

Centroid based clustering of high throughput sequencing reads based on n-mer counts

(2013) Alexander Solovyov et al.   BMC BIOINFORMATICS

Rainbow: an integrated tool for efficient clustering and assembling RAD-seq reads

(2012) Z. Chong et al.   BIOINFORMATICS

CD-HIT: accelerated for clustering the next-generation sequencing data

(2012) Limin Fu et al.   BIOINFORMATICS

A novel hierarchical clustering algorithm for gene sequences

(2012) Dan Wei et al.   BMC BIOINFORMATICS

MsDetector: toward a standard computational tool for DNA microsatellites detection

(2012) Hani Z. Girgis et al.   NUCLEIC ACIDS RESEARCH

SEED: efficient clustering of next-generation sequences

(2011) Ergude Bao et al.   BIOINFORMATICS

DNACLUST: accurate and efficient clustering of phylogenetic marker genes

(2011) Mohammadreza Ghodsi et al.   BMC BIOINFORMATICS

SlideSort: all pairs similarity search for short reads

(2010) Kana Shimizu et al.   BIOINFORMATICS

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Bacterial Community Variation in Human Body Habitats Across Space and Time

(2009) E. K. Costello et al.   SCIENCE

An overview of the wcd EST clustering tool

(2008) Scott Hazelhurst et al.   BIOINFORMATICS

MSB: A mean-shift-based approach for the analysis of structural variation in the genome

(2008) L.-y. Wang et al.   GENOME RESEARCH