Widespread ancient whole-genome duplications in Malpighiales coincide with Eocene global climatic upheaval
Published 2018 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Widespread ancient whole-genome duplications in Malpighiales coincide with Eocene global climatic upheaval
Authors
Keywords
-
Journal
NEW PHYTOLOGIST
Volume -, Issue -, Pages -
Publisher
Wiley
Online
2018-07-22
DOI
10.1111/nph.15357
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- The Apostasia genome and the evolution of orchids
- (2017) Guo-Qiang Zhang et al. NATURE
- The evolutionary significance of polyploidy
- (2017) Yves Van de Peer et al. NATURE REVIEWS GENETICS
- Improved transcriptome sampling pinpoints 26 ancient and more recent polyploidy events in Caryophyllales, including two allopolyploidy events
- (2017) Ya Yang et al. NEW PHYTOLOGIST
- Triparental plants provide direct evidence for polyspermy induced polyploidy
- (2017) Thomas Nakel et al. Nature Communications
- Direct vs. indirect effects of whole-genome duplication on prezygotic isolation in Chamerion angustifolium : Implications for rapid speciation
- (2016) Brian C. Husband et al. AMERICAN JOURNAL OF BOTANY
- An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG IV
- (2016) BOTANICAL JOURNAL OF THE LINNEAN SOCIETY
- Has the connection between polyploidy and diversification actually been tested?
- (2016) Elizabeth A Kellogg CURRENT OPINION IN PLANT BIOLOGY
- Evaluating and Characterizing Ancient Whole-Genome Duplications in Plants with Gene Count Data
- (2016) George P. Tiley et al. Genome Biology and Evolution
- Multiple Polyploidization Events across Asteraceae with Two Nested Events in the Early History Revealed by Nuclear Phylogenomics
- (2016) Chien-Hsun Huang et al. MOLECULAR BIOLOGY AND EVOLUTION
- Sequencing wild and cultivated cassava and related species reveals extensive interspecific hybridization and genetic diversity
- (2016) Jessen V Bredeson et al. NATURE BIOTECHNOLOGY
- Hybridization in Plants: Old Ideas, New Techniques
- (2016) Benjamin E. Goulet et al. PLANT PHYSIOLOGY
- ASTRAL-II: coalescent-based species tree estimation with many hundreds of taxa and thousands of genes
- (2015) Siavash Mirarab et al. BIOINFORMATICS
- BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs
- (2015) Felipe A. Simão et al. BIOINFORMATICS
- Dissecting Molecular Evolution in the Highly Diverse Plant Clade Caryophyllales Using Transcriptome Sequencing
- (2015) Ya Yang et al. MOLECULAR BIOLOGY AND EVOLUTION
- On the relative abundance of autopolyploids and allopolyploids
- (2015) Michael S. Barker et al. NEW PHYTOLOGIST
- Nested radiations and the pulse of angiosperm diversification: increased diversification rates often follow whole genome duplications
- (2015) David C. Tank et al. NEW PHYTOLOGIST
- A metacalibrated time-tree documents the early rise of flowering plant phylogenetic diversity
- (2015) Susana Magallón et al. NEW PHYTOLOGIST
- Beyond the Whole-Genome Duplication: Phylogenetic Evidence for an Ancient Interspecies Hybridization in the Baker's Yeast Lineage
- (2015) Marina Marcet-Houben et al. PLOS BIOLOGY
- Rcorrector: efficient and accurate error correction for Illumina RNA-seq reads
- (2015) Li Song et al. GigaScience
- Early genome duplications in conifers and other seed plants
- (2015) Z. Li et al. Science Advances
- mixtools: AnRPackage for Analyzing Finite Mixture Models
- (2015) Tatiana Benaglia et al. Journal of Statistical Software
- Phylogenetic pinpointing of a paleopolyploidy event within the flax genus (Linum) using transcriptomics
- (2014) Saemundur Sveinsson et al. ANNALS OF BOTANY
- RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
- (2014) Alexandros Stamatakis BIOINFORMATICS
- The willow genome and divergent evolution from poplar after the common genome duplication
- (2014) Xiaogang Dai et al. CELL RESEARCH
- Analysis of 41 plant genomes supports a wave of successful genome duplications in association with the Cretaceous–Paleogene boundary
- (2014) Kevin Vanneste et al. GENOME RESEARCH
- Multiple Polyploidy Events in the Early Radiation of Nodulating and Nonnodulating Legumes
- (2014) Steven B. Cannon et al. MOLECULAR BIOLOGY AND EVOLUTION
- Orthology Inference in Nonmodel Organisms Using Transcriptomes and Low-Coverage Genomes: Improving Accuracy and Matrix Occupancy for Phylogenomics
- (2014) Ya Yang et al. MOLECULAR BIOLOGY AND EVOLUTION
- Methods for studying polyploid diversification and the dead end hypothesis: a reply to Soltiset al. (2014)
- (2014) Itay Mayrose et al. NEW PHYTOLOGIST
- Are polyploids really evolutionary dead-ends (again)? A critical reappraisal of Mayroseet al. (2011)
- (2014) Douglas E. Soltis et al. NEW PHYTOLOGIST
- Integrated Syntenic and Phylogenomic Analyses Reveal an Ancient Genome Duplication in Monocots
- (2014) Yuannian Jiao et al. PLANT CELL
- Phylotranscriptomic analysis of the origin and early diversification of land plants
- (2014) Norman J. Wickett et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Allopolyploidy, diversification, and the Miocene grassland expansion
- (2014) Matt C. Estep et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- From Gene Trees to a Dated Allopolyploid Network: Insights from the Angiosperm Genus Viola (Violaceae)
- (2014) Thomas Marcussen et al. SYSTEMATIC BIOLOGY
- Data access for the 1,000 Plants (1KP) project
- (2014) Naim Matasci et al. GigaScience
- RCircos: an R package for Circos 2D track plots
- (2013) Hongen Zhang et al. BMC BIOINFORMATICS
- Combined Morphological and Molecular Phylogeny of the Clusioid Clade (Malpighiales) and the Placement of the Ancient Rosid Macrofossil Paleoclusia
- (2013) Brad R. Ruhfel et al. INTERNATIONAL JOURNAL OF PLANT SCIENCES
- Detecting and Locating Whole Genome Duplications on a Phylogeny: A Probabilistic Approach
- (2013) Charles-Elie Rabier et al. MOLECULAR BIOLOGY AND EVOLUTION
- MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
- (2013) K. Katoh et al. MOLECULAR BIOLOGY AND EVOLUTION
- The impact of environmental stress on male reproductive development in plants: biological processes and molecular mechanisms
- (2013) NICO DE STORME et al. PLANT CELL AND ENVIRONMENT
- Aberrant Classopollis pollen reveals evidence for unreduced (2n) pollen in the conifer family Cheirolepidiaceae during the Triassic-Jurassic transition
- (2013) W. M. Kurschner et al. PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Horizontal transfer of expressed genes in a parasitic flowering plant
- (2012) Zhenxiang Xi et al. BMC GENOMICS
- Polyploidy and its effect on evolutionary success: old questions revisited with new tools
- (2012) A Madlung HEREDITY
- MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearity
- (2012) Y. Wang et al. NUCLEIC ACIDS RESEARCH
- The genome of flax (Linum usitatissimum) assembledde novofrom short shotgun sequence reads
- (2012) Zhiwen Wang et al. PLANT JOURNAL
- Production of Diploid Male Gametes in Arabidopsis by Cold-Induced Destabilization of Postmeiotic Radial Microtubule Arrays
- (2012) N. De Storme et al. PLANT PHYSIOLOGY
- Phylogenomics and a posteriori data partitioning resolve the Cretaceous angiosperm radiation Malpighiales
- (2012) Z. Xi et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- A genome triplication associated with early diversification of the core eudicots
- (2012) Yuannian Jiao et al. GENOME BIOLOGY
- The more the better? The role of polyploidy in facilitating plant invasions
- (2011) M. te Beest et al. ANNALS OF BOTANY
- Proteinortho: Detection of (Co-)orthologs in large-scale analysis
- (2011) Marcus Lechner et al. BMC BIOINFORMATICS
- Polyploidization mechanisms: temperature environment can induce diploid gamete formation in Rosa sp.
- (2011) Y. Pecrix et al. JOURNAL OF EXPERIMENTAL BOTANY
- Ancestral polyploidy in seed plants and angiosperms
- (2011) Yuannian Jiao et al. NATURE
- Full-length transcriptome assembly from RNA-Seq data without a reference genome
- (2011) Manfred G Grabherr et al. NATURE BIOTECHNOLOGY
- Contemporaneous and recent radiations of the world's major succulent plant lineages
- (2011) M. Arakaki et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Recently Formed Polyploid Plants Diversify at Lower Rates
- (2011) I. Mayrose et al. SCIENCE
- Inferring Species Networks from Gene Trees in High-Polyploid North American and Hawaiian Violets (Viola, Violaceae)
- (2011) Thomas Marcussen et al. SYSTEMATIC BIOLOGY
- SUBARCTIC POLYPLOIDY
- (2010) ASKELL LÖVE HEREDITAS
- Effects of Rapid Global Warming at the Paleocene-Eocene Boundary on Neotropical Vegetation
- (2010) C. Jaramillo et al. SCIENCE
- Malpighiales phylogenetics: Gaining ground on one of the most recalcitrant clades in the angiosperm tree of life
- (2009) Kenneth J. Wurdack et al. AMERICAN JOURNAL OF BOTANY
- trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses
- (2009) S. Capella-Gutierrez et al. BIOINFORMATICS
- An analysis of synteny of Arachis with Lotus and Medicago sheds new light on the structure, stability and evolution of legume genomes.
- (2009) David J Bertioli et al. BMC GENOMICS
- The Future of Tropical Species on a Warmer Planet
- (2009) S. JOSEPH WRIGHT et al. CONSERVATION BIOLOGY
- Paleopolyploidy in the Brassicales: Analyses of the Cleome Transcriptome Elucidate the History of Genome Duplications in Arabidopsis and Other Brassicales
- (2009) Michael S. Barker et al. Genome Biology and Evolution
- Carbon dioxide forcing alone insufficient to explain Palaeocene–Eocene Thermal Maximum warming
- (2009) Richard E. Zeebe et al. Nature Geoscience
- Dating the origins of polyploidy events
- (2009) Jeff J. Doyle et al. NEW PHYTOLOGIST
- Angiosperm genome comparisons reveal early polyploidy in the monocot lineage
- (2009) H. Tang et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Evidence for a Cenozoic radiation of ferns in an angiosperm-dominated canopy
- (2009) E. Schuettpelz et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The frequency of polyploid speciation in vascular plants
- (2009) T. E. Wood et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Plants with double genomes might have had a better chance to survive the Cretaceous-Tertiary extinction event
- (2009) J. A. Fawcett et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Probabilistic Models of Chromosome Number Evolution and the Inference of Polyploidy
- (2009) Itay Mayrose et al. SYSTEMATIC BIOLOGY
- High-throughput gene and SNP discovery in Eucalyptus grandis, an uncharacterized genome
- (2008) Evandro Novaes et al. BMC GENOMICS
- Multiple Paleopolyploidizations during the Evolution of the Compositae Reveal Parallel Patterns of Duplicate Gene Retention after Millions of Years
- (2008) M. S. Barker et al. MOLECULAR BIOLOGY AND EVOLUTION
- An early Cenozoic perspective on greenhouse warming and carbon-cycle dynamics
- (2008) James C. Zachos et al. NATURE
- Accurate whole human genome sequencing using reversible terminator chemistry
- (2008) David R. Bentley et al. NATURE
- ECOLOGY: Putting the Heat on Tropical Animals
- (2008) J. J. Tewksbury et al. SCIENCE
- Adaptive evolution in invasive species
- (2008) Peter J. Prentis et al. TRENDS IN PLANT SCIENCE
Find the ideal target journal for your manuscript
Explore over 38,000 international journals covering a vast array of academic fields.
SearchAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started