The Complete Chloroplast Genome of Heimia myrtifolia and Comparative Analysis within Myrtales

The Complete Chloroplast Genome of Catha edulis: A Comparative Analysis of Genome Features with Related Species

(2018) Cuihua Gu et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

The Complete Plastome Sequences of Four Orchid Species: Insights into the Evolution of the Orchidaceae and the Utility of Plastomic Mutational Hotspots

(2017) Zhitao Niu et al.   Frontiers in Plant Science

The Complete Chloroplast Genomes of Three Cardiocrinum (Liliaceae) Species: Comparative Genomic and Phylogenetic Analyses

(2017) Rui-Sen Lu et al.   Frontiers in Plant Science

The Complete Chloroplast Genome of Wild Rice (Oryza minuta) and Its Comparison to Related Species

(2017) Sajjad Asaf et al.   Frontiers in Plant Science

A Phylogenetic Analysis of Chloroplast Genomes Elucidates the Relationships of the Six Economically Important Brassica Species Comprising the Triangle of U

(2017) Peirong Li et al.   Frontiers in Plant Science

The Chloroplast Genome of Passiflora edulis (Passifloraceae) Assembled from Long Sequence Reads: Structural Organization and Phylogenomic Studies in Malpighiales

(2017) Luiz A. Cauz-Santos et al.   Frontiers in Plant Science

Chloroplast Genome Analysis of Resurrection Tertiary Relict Haberlea rhodopensis Highlights Genes Important for Desiccation Stress Response

(2017) Zdravka Ivanova et al.   Frontiers in Plant Science

The chloroplast genome ofPhacus orbicularis(Euglenophyceae): an initial datum point for the phacaceae

(2016) Beth A. Kasiborski et al.   JOURNAL OF PHYCOLOGY

Multilocus inference of species trees and DNA barcoding

(2016) Diego Mallo et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

The Complete Chloroplast Genome Sequences of Five Epimedium Species: Lights into Phylogenetic and Taxonomic Analyses

(2016) Yanjun Zhang et al.   Frontiers in Plant Science

Complete Chloroplast Genome Sequence of Aquilaria sinensis (Lour.) Gilg and Evolution Analysis within the Malvales Order

(2016) Ying Wang et al.   Frontiers in Plant Science

The Complete Chloroplast Genome Sequences for Four Amaranthus Species (Amaranthaceae)

(2016) Lindsay Chaney et al.   Applications in Plant Sciences

The Complete Plastid Genome of Lagerstroemia fauriei and Loss of rpl2 Intron from Lagerstroemia (Lythraceae)

(2016) Cuihua Gu et al.   PLoS One

Complete chloroplast genome sequence of MD-2 pineapple and its comparative analysis among nine other plants from the subclass Commelinidae

(2015) R. M. Redwan et al.   BMC PLANT BIOLOGY

Synonymous Codon Usage Bias in the Plastid Genome is Unrelated to Gene Structure and Shows Evolutionary Heterogeneity

(2015) Yueying Qi et al.   Evolutionary Bioinformatics

The complete chloroplast genome sequence of the relict woody plant Metasequoia glyptostroboides Hu et Cheng

(2015) Jinhui Chen et al.   Frontiers in Plant Science

The complete chloroplast genome of Quercus baronii (Quercus L.)

(2015) Yan-ci Yang et al.   Mitochondrial DNA Part A

The completed eight chloroplast genomes of tomato from Solanum genus

(2015) Zhiqiang Wu   Mitochondrial DNA Part A

Are Differences in Genomic Data Sets due to True Biological Variants or Errors in Genome Assembly: An Example from Two Chloroplast Genomes

(2015) Zhiqiang Wu et al.   PLoS One

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

The whole chloroplast genome of shrub willows (Salix suchowensis)

(2014) Zhiqiang Wu   Mitochondrial DNA

Stress-induced transcriptional activation of retrotransposon-like sequences in the Scots pine (Pinus sylvestris L.) genome

(2014) Angelika Voronova et al.   Tree Genetics & Genomes

MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0

(2013) Koichiro Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

The Complete Chloroplast Genome Sequence of the Medicinal Plant Salvia miltiorrhiza

(2013) Jun Qian et al.   PLoS One

Indehiscent sporangia enable the accumulation of local fern diversity at the Qinghai-Tibetan Plateau

(2012) Li Wang et al.   BMC EVOLUTIONARY BIOLOGY

Complete cpDNA genome sequence of Smilax china and phylogenetic placement of Liliales – Influences of gene partitions and taxon sampling

(2012) Juan Liu et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Complete Chloroplast Genome Sequence of a Major Invasive Species, Crofton Weed (Ageratina adenophora)

(2012) Xiaojun Nie et al.   PLoS One

MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

(2012) Fredrik Ronquist et al.   SYSTEMATIC BIOLOGY

Beyond Junk-Variable Tandem Repeats as Facilitators of Rapid Evolution of Regulatory and Coding Sequences

(2012) Rita Gemayel et al.   Genes

The evolution of the plastid chromosome in land plants: gene content, gene order, gene function

(2011) Susann Wicke et al.   PLANT MOLECULAR BIOLOGY

Phylogeography of the Sino-Himalayan Fern Lepisorus clathratus on “The Roof of the World”

(2011) Li Wang et al.   PLoS One

Synonymous but not the same: the causes and consequences of codon bias

(2010) Joshua B. Plotkin et al.   NATURE REVIEWS GENETICS

New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

(2010) Stéphane Guindon et al.   SYSTEMATIC BIOLOGY

Phylogeny of the Celastreae (Celastraceae) and the relationships of Catha edulis (qat) inferred from morphological characters and nuclear and plastid genes

(2008) Mark P. Simmons et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION