The role of hybridization during ecological divergence of southwestern white pine (Pinus strobiformis ) and limber pine (P. flexilis )

Southwestern white pine ( Pinus strobiformis ) species distribution models project a large range shift and contraction due to regional climatic changes

(2018) Andrew J. Shirk et al.   FOREST ECOLOGY AND MANAGEMENT

Genomic insights into adaptive divergence and speciation among malaria vectors of the Anopheles nili group

(2017) Caroline Fouet et al.   Evolutionary Applications

Contrasting Rates of Molecular Evolution and Patterns of Selection among Gymnosperms and Flowering Plants

(2017) Amanda R. De La Torre et al.   MOLECULAR BIOLOGY AND EVOLUTION

Speciation as a sieve for ancestral polymorphism

(2017) Rafael F. Guerrero et al.   MOLECULAR ECOLOGY

Water availability drives signatures of local adaptation in whitebark pine (Pinus albicaulis Engelm.) across fine spatial scales of the Lake Tahoe Basin, USA

(2017) Brandon M. Lind et al.   MOLECULAR ECOLOGY

Patterns of divergence across the geographic and genomic landscape of a butterfly hybrid zone associated with a climatic gradient

(2017) Sean F. Ryan et al.   MOLECULAR ECOLOGY

Intrinsic incompatibilities evolving as a by-product of divergent ecological selection: Considering them in empirical studies on divergence with gene flow

(2017) J. Kulmuni et al.   MOLECULAR ECOLOGY

Incipient ecological speciation between successional varieties of a dominant tree involves intrinsic postzygotic isolating barriers

(2017) Elizabeth A. Stacy et al.   Ecology and Evolution

Insight into the roles of selection in speciation from genomic patterns of divergence and introgression in secondary contact in venomous rattlesnakes

(2017) Drew R. Schield et al.   Ecology and Evolution

Evolution of reproductive isolation in stickleback fish

(2016) Alycia C. R. Lackey et al.   EVOLUTION

Genetically informed ecological niche models improve climate change predictions

(2016) Dana H. Ikeda et al.   GLOBAL CHANGE BIOLOGY

The evolution of genomic islands by increased establishment probability of linked alleles

(2016) Sam Yeaman et al.   MOLECULAR ECOLOGY

Genomic landscape of early ecological speciation initiated by selection on nuptial colour

(2016) David Alexander Marques et al.   MOLECULAR ECOLOGY

Adaptive evolution and segregating load contribute to the genomic landscape of divergence in two tree species connected by episodic gene flow

(2016) Camille Christe et al.   MOLECULAR ECOLOGY

Increased water deficit decreases Douglas fir growth throughout western US forests

(2016) Christina M. Restaino et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genetic variation inPinus strobiformisgrowth and drought tolerance from southwestern US populations

(2016) Betsy A. Goodrich et al.   TREE PHYSIOLOGY

Spatially Heterogeneous Environmental Selection Strengthens Evolution of Reproductively Isolated Populations in a Dobzhansky–Muller System of Hybrid Incompatibility

(2016) Samuel A. Cushman et al.   Frontiers in Genetics

Single-Locus versus Multilocus Patterns of Local Adaptation to Climate in Eastern White Pine (Pinus strobus, Pinaceae)

(2016) Om P. Rajora et al.   PLoS One

spThin: an R package for spatial thinning of species occurrence records for use in ecological niche models

(2015) Matthew E. Aiello-Lammens et al.   ECOGRAPHY

The geography of divergence with gene flow facilitates multitrait adaptation and the evolution of pollinator isolation inMimulus aurantiacus

(2015) Sean Stankowski et al.   EVOLUTION

Mosaic genetic differentiation along environmental and geographic gradients indicate divergent selection in a white pine species complex

(2015) Alejandra Moreno-Letelier et al.   EVOLUTIONARY ECOLOGY

Genetic architecture and genomic patterns of gene flow between hybridizing species of Picea

(2015) A De La Torre et al.   HEREDITY

Evolutionary and demographic history of the Californian scrub white oak species complex: an integrative approach

(2015) Joaquín Ortego et al.   MOLECULAR ECOLOGY

Tracking the progression of speciation: variable patterns of introgression across the genome provide insights on the species delimitation between progenitor-derivative spruces (Picea mariana×P. rubens)

(2015) Guillaume de Lafontaine et al.   MOLECULAR ECOLOGY

The relative power of genome scans to detect local adaptation depends on sampling design and statistical method

(2015) Katie E. Lotterhos et al.   MOLECULAR ECOLOGY

Similar but not equivalent: ecological niche comparison across closely-related Mexican white pines

(2014) Jesús Aguirre-Gutiérrez et al.   DIVERSITY AND DISTRIBUTIONS

LANDSCAPE GENOMICS OFPOPULUS TRICHOCARPA: THE ROLE OF HYBRIDIZATION, LIMITED GENE FLOW, AND NATURAL SELECTION IN SHAPING PATTERNS OF POPULATION STRUCTURE

(2014) Armando Geraldes et al.   EVOLUTION

fastSTRUCTURE: Variational Inference of Population Structure in Large SNP Data Sets

(2014) Anil Raj et al.   GENETICS

Influence of climatic niche suitability and geographical overlap on hybridization patterns among southern Californian oaks

(2014) Joaquín Ortego et al.   JOURNAL OF BIOGEOGRAPHY

Unexpected ancestry ofPopulusseedlings from a hybrid zone implies a large role for postzygotic selection in the maintenance of species

(2014) Dorothea Lindtke et al.   MOLECULAR ECOLOGY

Admixture and the organization of genetic diversity in a butterfly species complex revealed through common and rare genetic variants

(2014) Zachariah Gompert et al.   MOLECULAR ECOLOGY

Climatic adaptation and ecological divergence between two closely related pine species in Southeast China

(2014) Yongfeng Zhou et al.   MOLECULAR ECOLOGY

Theoretical models of the influence of genomic architecture on the dynamics of speciation

(2014) Samuel M. Flaxman et al.   MOLECULAR ECOLOGY

Reanalysis suggests that genomic islands of speciation are due to reduced diversity, not reduced gene flow

(2014) Tami E. Cruickshank et al.   MOLECULAR ECOLOGY

Cross-species outlier detection reveals different evolutionary pressures between sister species

(2014) Catherine I. Cullingham et al.   NEW PHYTOLOGIST

Insights into Conifer Giga-Genomes

(2014) A. R. De La Torre et al.   PLANT PHYSIOLOGY

European sea bass genome and its variation provide insights into adaptation to euryhalinity and speciation

(2014) Mbaye Tine et al.   Nature Communications

dDocent: a RADseq, variant-calling pipeline designed for population genomics of non-model organisms

(2014) Jonathan B. Puritz et al.   PeerJ

DIVERGENCE IS FOCUSED ON FEW GENOMIC REGIONS EARLY IN SPECIATION: INCIPIENT SPECIATION OF SUNFLOWER ECOTYPES

(2013) Rose L. Andrew et al.   EVOLUTION

Potential for evolutionary responses to climate change - evidence from tree populations

(2013) Florian J. Alberto et al.   GLOBAL CHANGE BIOLOGY

Model selection as a tool for phylogeographic inference: an example from the willowSalix melanopsis

(2013) Bryan C. Carstens et al.   MOLECULAR ECOLOGY

The genomic consequences of adaptive divergence and reproductive isolation between species of manakins

(2013) T. L. Parchman et al.   MOLECULAR ECOLOGY

Adaptation and exogenous selection in aPicea glauca×Picea engelmanniihybrid zone: implications for forest management under climate change

(2013) Amanda R. De La Torre et al.   NEW PHYTOLOGIST

Niche Divergence versus Neutral Processes: Combined Environmental and Genetic Analyses Identify Contrasting Patterns of Differentiation in Recently Diverged Pine Species

(2013) Alejandra Moreno-Letelier et al.   PLoS One

Alternative forms for genomic clines

(2013) Benjamin M. Fitzpatrick   Ecology and Evolution

Evolutionary Biology for the 21st Century

(2013) Jonathan B. Losos et al.   PLOS BIOLOGY

A spruce gene map infers ancient plant genome reshuffling and subsequent slow evolution in the gymnosperm lineage leading to extant conifers

(2012) Nathalie Pavy et al.   BMC BIOLOGY

Estimating ancestry and heterozygosity of hybrids using molecular markers

(2012) Benjamin M Fitzpatrick   BMC EVOLUTIONARY BIOLOGY

Slow but not low: genomic comparisons reveal slower evolutionary rate and higher dN/dS in conifers compared to angiosperms

(2012) Emmanuel Buschiazzo et al.   BMC EVOLUTIONARY BIOLOGY

GENOMIC REGIONS WITH A HISTORY OF DIVERGENT SELECTION AFFECT FITNESS OF HYBRIDS BETWEEN TWO BUTTERFLY SPECIES

(2012) Zachariah Gompert et al.   EVOLUTION

Pinus strobiformis (southwestern white pine) stand dynamics, regeneration, and disturbance ecology: A review

(2012) Christopher E. Looney et al.   FOREST ECOLOGY AND MANAGEMENT

Genic and nongenic contributions to natural variation of quantitative traits in maize

(2012) X. Li et al.   GENOME RESEARCH

Recombinant hybrids retain heterozygosity at many loci: new insights into the genomics of reproductive isolation inPopulus

(2012) Dorothea Lindtke et al.   MOLECULAR ECOLOGY

Genomic and phenotypic architecture of a spruce hybrid zone (Picea sitchensis × P. glauca)

(2012) Jill A. Hamilton et al.   MOLECULAR ECOLOGY

Genome-wide architecture of reproductive isolation in a naturally occurring hybrid zone betweenMus musculus musculusandM. m. domesticus

(2012) VÁCLAV JANOUŠEK et al.   MOLECULAR ECOLOGY

Genome divergence during evolutionary diversification as revealed in replicate lake-stream stickleback population pairs

(2012) MARIUS ROESTI et al.   MOLECULAR ECOLOGY

Genome-wide association genetics of an adaptive trait in lodgepole pine

(2012) THOMAS L. PARCHMAN et al.   MOLECULAR ECOLOGY

bgc: Software for Bayesian estimation of genomic clines

(2012) Z. Gompert et al.   Molecular Ecology Resources

Double Digest RADseq: An Inexpensive Method for De Novo SNP Discovery and Genotyping in Model and Non-Model Species

(2012) Brant K. Peterson et al.   PLoS One

The genomics of speciation-with-gene-flow

(2012) Jeffrey L. Feder et al.   TRENDS IN GENETICS

ESTABLISHMENT AND MAINTENANCE OF ADAPTIVE GENETIC DIVERGENCE UNDER MIGRATION, SELECTION, AND DRIFT

(2011) Sam Yeaman et al.   EVOLUTION

Bayesian estimation of genomic clines

(2011) ZACHARIAH GOMPERT et al.   MOLECULAR ECOLOGY

The coupling hypothesis: why genome scans may fail to map local adaptation genes

(2011) NICOLAS BIERNE et al.   MOLECULAR ECOLOGY

Genomic divergence during speciation: causes and consequences

(2011) P. Nosil et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Genomics of isolation in hybrids

(2011) Z. Gompert et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Genomic Admixture Analysis in European Populus spp. Reveals Unexpected Patterns of Reproductive Isolation and Mating

(2010) C. Lexer et al.   GENETICS

A review of drought concepts

(2010) Ashok K. Mishra et al.   JOURNAL OF HYDROLOGY

Admixture facilitates adaptation from standing variation in the European aspen (Populus tremulaL.), a widespread forest tree

(2010) DULCINEIA DE CARVALHO et al.   MOLECULAR ECOLOGY

Adaptation – not by sweeps alone

(2010) Jonathan K. Pritchard et al.   NATURE REVIEWS GENETICS

Widespread, ecologically relevant genetic markers developed from association mapping of climate-related traits in Sitka spruce (Picea sitchensis)

(2010) Jason A. Holliday et al.   NEW PHYTOLOGIST

Forest responses to increasing aridity and warmth in the southwestern United States

(2010) A. P. Williams et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

THE EVOLUTION OF STRONG REPRODUCTIVE ISOLATION

(2009) Nicholas H. Barton et al.   EVOLUTION

COMPARATIVE GENOMIC AND POPULATION GENETIC ANALYSES INDICATE HIGHLY POROUS GENOMES AND HIGH LEVELS OF GENE FLOW BETWEEN DIVERGENTHELIANTHUSSPECIES

(2009) Nolan C. Kane et al.   EVOLUTION

Islands of speciation or mirages in the desert? Examining the role of restricted recombination in maintaining species

(2009) M A F Noor et al.   HEREDITY

introgress: a software package for mapping components of isolation in hybrids

(2009) ZACHARIAH GOMPERT et al.   Molecular Ecology Resources

Genetics and ecological speciation

(2009) D. Schluter et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Ecological explanations for (incomplete) speciation

(2009) Patrik Nosil et al.   TRENDS IN ECOLOGY & EVOLUTION

Gene flow and species delimitation

(2009) Rémy J. Petit et al.   TRENDS IN ECOLOGY & EVOLUTION

A Genealogical Interpretation of Principal Components Analysis

(2009) Gil McVean   PLoS Genetics

Inferring the Joint Demographic History of Multiple Populations from Multidimensional SNP Frequency Data

(2009) Ryan N. Gutenkunst et al.   PLoS Genetics

ENVIRONMENTAL NICHE EQUIVALENCY VERSUS CONSERVATISM: QUANTITATIVE APPROACHES TO NICHE EVOLUTION

(2008) Dan L. Warren et al.   EVOLUTION

Phylogeographic structure ofPinus strobiformisEngelm. across the Chihuahuan Desert filter-barrier

(2008) Alejandra Moreno-Letelier et al.   JOURNAL OF BIOGEOGRAPHY

Speciation with gene flow could be common

(2008) PATRIK NOSIL   MOLECULAR ECOLOGY

The role of hybridization in evolution

(2003) N. H. Barton   MOLECULAR ECOLOGY