Cross-species outlier detection reveals different evolutionary pressures between sister species

Evaluation of demographic history and neutral parameterization on the performance ofFSToutlier tests

(2014) Katie E. Lotterhos et al.   MOLECULAR ECOLOGY

Patterns of Selection in Plant Genomes

(2013) Josh Hough et al.   Annual Review of Ecology Evolution and Systematics

Effects of introgression on the genetic population structure of two ecologically and economically important conifer species: lodgepole pine (Pinus contorta var. latifolia) and jack pine (Pinus banksiana)

(2013) Catherine I. Cullingham et al.   GENOME

Pervasive selection or is it…? why areFSToutliers sometimes so frequent?

(2013) Nicolas Bierne et al.   MOLECULAR ECOLOGY

Multilocus analyses reveal little evidence for lineage-wide adaptive evolution within major clades of soft pines (PinussubgenusStrobus)

(2013) Andrew J. Eckert et al.   MOLECULAR ECOLOGY

Detecting selection along environmental gradients: analysis of eight methods and their effectiveness for outbreeding and selfing populations

(2013) Stéphane De Mita et al.   MOLECULAR ECOLOGY

An atlas of over 90,000 conserved noncoding sequences provides insight into crucifer regulatory regions

(2013) Annabelle Haudry et al.   NATURE GENETICS

Influence of water deficit on the molecular responses of Pinus contorta x Pinus banksiana mature trees to infection by the mountain pine beetle fungal associate, Grosmannia clavigera

(2013) A. Arango-Velez et al.   TREE PHYSIOLOGY

Predicting Adaptive Phenotypes From Multilocus Genotypes in Sitka Spruce ( Picea sitchensis ) Using Random Forest

(2013) Jason A. Holliday et al.   G3-Genes Genomes Genetics

GenAlEx 6.5: genetic analysis in Excel. Population genetic software for teaching and research--an update

(2012) R. Peakall et al.   BIOINFORMATICS

Separating the wheat from the chaff: mitigating the effects of noise in a plastome phylogenomic data set from Pinus L. (Pinaceae)

(2012) Matthew Parks et al.   BMC EVOLUTIONARY BIOLOGY

Characterizing the physical and genetic structure of the lodgepole pine × jack pine hybrid zone: mosaic structure and differential introgression

(2012) Catherine I. Cullingham et al.   Evolutionary Applications

Genome scanning for detecting adaptive genes along environmental gradients in the Japanese conifer, Cryptomeria japonica

(2012) Y Tsumura et al.   HEREDITY

Differential introgression from a sister species explains highFSToutlier loci within a mussel species

(2012) C. C. Gosset et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Genetic architecture in a marine hybrid zone: comparing outlier detection and genomic clines analysis in the bivalveMacoma balthica

(2012) P. C. LUTTIKHUIZEN et al.   MOLECULAR ECOLOGY

Differential introgression reveals candidate genes for selection across a spruce (Picea sitchensis × P. glauca) hybrid zone

(2012) Jill A. Hamilton et al.   NEW PHYTOLOGIST

QTL mapping in white spruce: gene maps and genomic regions underlying adaptive traits across pedigrees, years and environments

(2011) Betty Pelgas et al.   BMC GENOMICS

How closely does genetic diversity in finite populations conform to predictions of neutral theory? Large deficits in regions of low recombination

(2011) R Frankham   HEREDITY

Effect of Water Stress and Fungal Inoculation on Monoterpene Emission from an Historical and a New Pine Host of the Mountain Pine Beetle

(2011) Inka Lusebrink et al.   JOURNAL OF CHEMICAL ECOLOGY

Mountain pine beetle host-range expansion threatens the boreal forest

(2011) CATHERINE I. CULLINGHAM et al.   MOLECULAR ECOLOGY

The coupling hypothesis: why genome scans may fail to map local adaptation genes

(2011) NICOLAS BIERNE et al.   MOLECULAR ECOLOGY

Comparison ofFSToutlier tests for SNP loci under selection

(2011) SHAWN R. NARUM et al.   Molecular Ecology Resources

Climate change and evolutionary adaptation

(2011) Ary A. Hoffmann et al.   NATURE

The Arabidopsis Information Resource (TAIR): improved gene annotation and new tools

(2011) Philippe Lamesch et al.   NUCLEIC ACIDS RESEARCH

A White Spruce Gene Catalog for Conifer Genome Analyses

(2011) Philippe Rigault et al.   PLANT PHYSIOLOGY

The Neutral Theory of Molecular Evolution in the Genomic Era

(2010) Masatoshi Nei et al.   Annual Review of Genomics and Human Genetics

Fast and SNP-tolerant detection of complex variants and splicing in short reads

(2010) T. D. Wu et al.   BIOINFORMATICS

Climate Change and Bark Beetles of the Western United States and Canada: Direct and Indirect Effects

(2010) Barbara J. Bentz et al.   BIOSCIENCE

Patterns of Population Structure and Environmental Associations to Aridity Across the Range of Loblolly Pine (Pinus taeda L., Pinaceae)

(2010) A. J. Eckert et al.   GENETICS

Using Environmental Correlations to Identify Loci Underlying Local Adaptation

(2010) G. Coop et al.   GENETICS

Applications of next generation sequencing in molecular ecology of non-model organisms

(2010) R Ekblom et al.   HEREDITY

Climate change and range expansion of an aggressive bark beetle: evidence of higher beetle reproduction in naïve host tree populations

(2010) Timothy J. Cudmore et al.   JOURNAL OF APPLIED ECOLOGY

Comparing three different methods to detect selective loci using dominant markers

(2010) A. PÉREZ-FIGUEROA et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Genome Wide Analyses Reveal Little Evidence for Adaptive Evolution in Many Plant Species

(2010) T. I. Gossmann et al.   MOLECULAR BIOLOGY AND EVOLUTION

Genomic signals of diversification along ecological gradients in a tropical lizard

(2010) ADAM H. FREEDMAN et al.   MOLECULAR ECOLOGY

Postglacial history of a widespread conifer produces inverse clines in selective neutrality tests

(2010) J. A. HOLLIDAY et al.   MOLECULAR ECOLOGY

Multiple approaches to detect outliers in a genome scan for selection in ocellated lizards (Lacerta lepida) along an environmental gradient

(2010) VERA L. NUNES et al.   MOLECULAR ECOLOGY

Back to nature: ecological genomics of loblolly pine (Pinus taeda, Pinaceae)

(2010) ANDREW J. ECKERT et al.   MOLECULAR ECOLOGY

Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows

(2010) LAURENT EXCOFFIER et al.   Molecular Ecology Resources

Adaptation – not by sweeps alone

(2010) Jonathan K. Pritchard et al.   NATURE REVIEWS GENETICS

The population genomics of plant adaptation

(2010) Mathieu Siol et al.   NEW PHYTOLOGIST

Adaptations to new environments in humans: the role of subtle allele frequency shifts

(2010) A. M. Hancock et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Parallel adaptive evolution of Atlantic cod on both sides of the Atlantic Ocean in response to temperature

(2010) I. R. Bradbury et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Historical and projected climate data for natural resource management in western Canada

(2009) Michael S. Mbogga et al.   AGRICULTURAL AND FOREST METEOROLOGY

Genomic signatures of local directional selection in a high gene flow marine organism; the Atlantic cod (Gadus morhua)

(2009) Einar E Nielsen et al.   BMC EVOLUTIONARY BIOLOGY

Landscape genomics and biased FST approaches reveal single nucleotide polymorphisms under selection in goat breeds of North-East Mediterranean

(2009) Lorraine Pariset et al.   BMC GENETICS

Climate change impacts, adaptive capacity, and vulnerability of European forest ecosystems

(2009) Marcus Lindner et al.   FOREST ECOLOGY AND MANAGEMENT

Detecting loci under selection in a hierarchically structured population

(2009) L Excoffier et al.   HEREDITY

A powerful regression-based method for admixture mapping of isolation across the genome of hybrids

(2009) ZACHARIAH GOMPERT et al.   MOLECULAR ECOLOGY

introgress: a software package for mapping components of isolation in hybrids

(2009) ZACHARIAH GOMPERT et al.   Molecular Ecology Resources

When divergent life histories hybridize: insights into adaptive life-history traits in an annual weed

(2009) Lesley G. Campbell et al.   NEW PHYTOLOGIST

TOWARD A SELECTION THEORY OF MOLECULAR EVOLUTION

(2008) Matthew W. Hahn   EVOLUTION

Adaptation, migration or extirpation: climate change outcomes for tree populations

(2008) Sally N. Aitken et al.   Evolutionary Applications

A Genome-Scan Method to Identify Selected Loci Appropriate for Both Dominant and Codominant Markers: A Bayesian Perspective

(2008) M. Foll et al.   GENETICS

Mutation-Selection Models of Codon Substitution and Their Use to Estimate Selective Strengths on Codon Usage

(2008) Z. Yang et al.   MOLECULAR BIOLOGY AND EVOLUTION

Scanning the genome for gene single nucleotide polymorphisms involved in adaptive population differentiation in white spruce

(2008) MARIE-CLAIRE NAMROUD et al.   MOLECULAR ECOLOGY

Comparative genomics and the study of evolution by natural selection

(2008) HANS ELLEGREN   MOLECULAR ECOLOGY

Spatial analysis method (sam): a software tool combining molecular and environmental data to identify candidate loci for selection

(2008) STÉPHANE JOOST et al.   Molecular Ecology Resources

Fission and fusion of Darwin's finches populations

(2008) B.R. Grant et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Sequencing breakthroughs for genomic ecology and evolutionary biology

(2007) MATTHEW E. HUDSON   Molecular Ecology Resources

genepop’007: a complete re-implementation of the genepop software for Windows and Linux

(2007) FRANÇOIS ROUSSET   Molecular Ecology Resources