Standing genetic diversity and selection at functional gene loci are associated with differential invasion success in two non-native fish species

Plasticity in gene transcription explains the differential performance of two invasive fish species

(2017) Kyle W. Wellband et al.   Evolutionary Applications

Climate variables explain neutral and adaptive variation within salmonid metapopulations: the importance of replication in landscape genetics

(2016) Brian K. Hand et al.   MOLECULAR ECOLOGY

Niche plasticity in invasive fishes in the Great Lakes

(2015) Harri Pettitt-Wade et al.   BIOLOGICAL INVASIONS

Applications of next-generation sequencing to the study of biological invasions

(2015) Marc Rius et al.   Current Zoology

Fitting Linear Mixed-Effects Models Usinglme4

(2015) Douglas Bates et al.   Journal of Statistical Software

The devil is in the details: genetic variation in introduced populations and its contributions to invasion

(2015) Katrina M. Dlugosch et al.   MOLECULAR ECOLOGY

Transcriptome sequencing reveals both neutral and adaptive genome dynamics in a marine invader

(2015) C. K. Tepolt et al.   MOLECULAR ECOLOGY

Expansion load: recessive mutations and the role of standing genetic variation

(2015) Stephan Peischl et al.   MOLECULAR ECOLOGY

SNP genotyping and population genomics from expressed sequences - current advances and future possibilities

(2015) Pierre De Wit et al.   MOLECULAR ECOLOGY

Applications of next-generation sequencing to the study of biological invasions

(2015) Marc Rius et al.   Current Zoology

LEMONS – A Tool for the Identification of Splice Junctions in Transcriptomes of Organisms Lacking Reference Genomes

(2015) Liron Levin et al.   PLoS One

Biological invasions, climate change and genomics

(2014) Steven L. Chown et al.   Evolutionary Applications

Evaluation of demographic history and neutral parameterization on the performance ofFSToutlier tests

(2014) Katie E. Lotterhos et al.   MOLECULAR ECOLOGY

Genotyping-in-Thousands by sequencing (GT-seq): A cost effective SNP genotyping method based on custom amplicon sequencing

(2014) Nathan R. Campbell et al.   Molecular Ecology Resources

Adaptive genetic markers discriminate migratory runs of Chinook salmon (Oncorhynchus tshawytscha) amid continued gene flow

(2013) Kathleen G. O'Malley et al.   Evolutionary Applications

Robust Identification of Local Adaptation from Allele Frequencies

(2013) T. Gunther et al.   GENETICS

The elephant in the room: the role of failed invasions in understanding invasion biology

(2013) Rafael D. Zenni et al.   OIKOS

Geographical range, heat tolerance and invasion success in aquatic species

(2013) A. E. Bates et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Rapid Adaptation to Climate Facilitates Range Expansion of an Invasive Plant

(2013) R. I. Colautti et al.   SCIENCE

Genome sequencing and population genomics in non-model organisms

(2013) Hans Ellegren   TRENDS IN ECOLOGY & EVOLUTION

Landscape heterogeneity and local adaptation define the spatial genetic structure of Pacific salmon in a pristine environment

(2012) Michael W. Ackerman et al.   CONSERVATION GENETICS

A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff

(2012) Pablo Cingolani et al.   FLY

First report of tubenose goby (Proterorhinus semilunaris) in the eastern basin of Lake Erie

(2012) Kelly A. Grant et al.   JOURNAL OF GREAT LAKES RESEARCH

PGDSpider: an automated data conversion tool for connecting population genetics and genomics programs

(2011) H. E. L. Lischer et al.   BIOINFORMATICS

Expansion of tubenose gobies Proterorhinus semilunaris into western Lake Erie and potential effects on native species

(2011) P. M. Kocovsky et al.   BIOLOGICAL INVASIONS

What can DNA tell us about biological invasions?

(2011) Benjamin M. Fitzpatrick et al.   BIOLOGICAL INVASIONS

Founder events predict changes in genetic diversity during human-mediated range expansions

(2011) Tobias Uller et al.   GLOBAL CHANGE BIOLOGY

The occurrence of non-native tubenose goby Proterorhinus semilunaris in the pelagic 0+ year fish assemblage of a central European reservoir

(2011) M. Vašek et al.   JOURNAL OF FISH BIOLOGY

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

A framework for variation discovery and genotyping using next-generation DNA sequencing data

(2011) Mark A DePristo et al.   NATURE GENETICS

Discriminant analysis of principal components: a new method for the analysis of genetically structured populations

(2010) Thibaut Jombart et al.   BMC GENETICS

Detecting Selection in Population Trees: The Lewontin and Krakauer Test Extended

(2010) Maxime Bonhomme et al.   GENETICS

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

The Heat Shock Response: Life on the Verge of Death

(2010) Klaus Richter et al.   MOLECULAR CELL

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Evolution and phylogeography of the tubenose goby genus Proterorhinus (Gobiidae: Teleostei): evidence for new cryptic species

(2009) MATTHEW E. NEILSON et al.   BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

Animal performance and stress: responses and tolerance limits at different levels of biological organisation

(2009) Karin S. Kassahn et al.   BIOLOGICAL REVIEWS

Rapid evolution in introduced species, ‘invasive traits’ and recipient communities: challenges for predicting invasive potential

(2009) Kenneth D. Whitney et al.   DIVERSITY AND DISTRIBUTIONS

adegenet: a R package for the multivariate analysis of genetic markers

(2008) Thibaut Jombart   BIOINFORMATICS

Simultaneous Inference in General Parametric Models

(2008) Torsten Hothorn et al.   BIOMETRICAL JOURNAL

BatchPrimer3: A high throughput web application for PCR and sequencing primer design

(2008) Frank M You et al.   BMC BIOINFORMATICS

Eco-evolutionary vs. habitat contributions to invasion in salmon: experimental evaluation in the wild

(2007) MICHAEL T. KINNISON et al.   MOLECULAR ECOLOGY

Founding events in species invasions: genetic variation, adaptive evolution, and the role of multiple introductions

(2007) K. M. DLUGOSCH et al.   MOLECULAR ECOLOGY