Increased productivity in poultry birds by sub-lethal dose of antibiotics is arbitrated by selective enrichment of gut microbiota, particularly short-chain fatty acid producers

From Dietary Fiber to Host Physiology: Short-Chain Fatty Acids as Key Bacterial Metabolites

(2016) Ara Koh et al.   CELL

Insights into the biodiversity of the gut microbiota of broiler chickens

(2016) Leonardo Mancabelli et al.   ENVIRONMENTAL MICROBIOLOGY

Bacteria within the Gastrointestinal Tract Microbiota Correlated with Improved Growth and Feed Conversion: Challenges Presented for the Identification of Performance Enhancing Probiotic Bacteria

(2016) Dragana Stanley et al.   Frontiers in Microbiology

Deciphering chicken gut microbial dynamics based on high-throughput 16S rRNA metagenomics analyses

(2015) Mohd Mohd Shaufi et al.   Gut Pathogens

Isolation and Characterization of Faecalibacterium prausnitzii from Calves and Piglets

(2015) Carla Foditsch et al.   PLoS One

Microbiota of the chicken gastrointestinal tract: influence on health, productivity and disease

(2014) Dragana Stanley et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

STAMP: statistical analysis of taxonomic and functional profiles

(2014) Donovan H. Parks et al.   BIOINFORMATICS

Diet is a major factor governing the fecal butyrate-producing community structure across Mammalia, Aves and Reptilia

(2014) Marius Vital et al.   ISME Journal

Intestinal Colonization by a Lachnospiraceae Bacterium Contributes to the Development of Diabetes in Obese Mice

(2014) Keishi Kameyama et al.   MICROBES AND ENVIRONMENTS

Extensive Microbial and Functional Diversity within the Chicken Cecal Microbiome

(2014) Martin J. Sergeant et al.   PLoS One

Succession and Replacement of Bacterial Populations in the Caecum of Egg Laying Hens over Their Whole Life

(2014) Petra Videnska et al.   PLoS One

From lifetime to evolution: timescales of human gut microbiota adaptation

(2014) Sara Quercia et al.   Frontiers in Microbiology

Captivity results in disparate loss of gut microbial diversity in closely related hosts

(2014) K. D. Kohl et al.   Conservation Physiology

Determining the culturability of the rumen bacterial microbiome

(2014) Christopher J. Creevey et al.   Microbial Biotechnology

Intestinal microbiota and metabolites--Implications for broiler chicken health and performance1

(2013) T. Rinttila et al.   JOURNAL OF APPLIED POULTRY RESEARCH

Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences

(2013) Morgan G I Langille et al.   NATURE BIOTECHNOLOGY

UPARSE: highly accurate OTU sequences from microbial amplicon reads

(2013) Robert C Edgar   NATURE METHODS

Rapid 16S rRNA Next-Generation Sequencing of Polymicrobial Clinical Samples for Diagnosis of Complex Bacterial Infections

(2013) Stephen J. Salipante et al.   PLoS One

Assessing the Fecal Microbiota: An Optimized Ion Torrent 16S rRNA Gene-Based Analysis Protocol

(2013) Christian Milani et al.   PLoS One

Bacterial census of poultry intestinal microbiome

(2013) S. Wei et al.   POULTRY SCIENCE

Functional Cloning and Characterization of Antibiotic Resistance Genes from the Chicken Gut Microbiome

(2012) Wei Zhou et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Abrupt Temporal Fluctuations in the Chicken Fecal Microbiota Are Explained by Its Gastrointestinal Origin

(2012) M. Sekelja et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Intestinal microbiota associated with differential feed conversion efficiency in chickens

(2012) Dragana Stanley et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Gut microbiota disturbance during antibiotic therapy: a multi-omic approach

(2012) Ana Elena Pérez-Cobas et al.   GUT

How glycan metabolism shapes the human gut microbiota

(2012) Nicole M. Koropatkin et al.   NATURE REVIEWS MICROBIOLOGY

Investigation of the Enteric Pathogenic Potential of Oral Campylobacter concisus Strains Isolated from Patients with Inflammatory Bowel Disease

(2012) Yazan Ismail et al.   PLoS One

Lactobacillus reuteri Prevents Diet-Induced Obesity, but not Atherosclerosis, in a Strain Dependent Fashion in Apoe−/− Mice

(2012) Frida Fåk et al.   PLoS One

The microbiome of the chicken gastrointestinal tract

(2012) Carl J. Yeoman et al.   ANIMAL HEALTH RESEARCH REVIEWS

Frequency of Firmicutes and Bacteroidetes in gut microbiota in obese and normal weight Egyptian children and adults

(2011) Nagwa Abdallah Ismail et al.   Archives of Medical Science

Massive parallel 16S rRNA gene pyrosequencing reveals highly diverse fecal bacterial and fungal communities in healthy dogs and cats

(2011) Stefanie Handl et al.   FEMS MICROBIOLOGY ECOLOGY

In VitroCulture Conditions for Maintaining a Complex Population of Human Gastrointestinal Tract Microbiota

(2011) Bong-Soo Kim et al.   JOURNAL OF BIOMEDICINE AND BIOTECHNOLOGY

The Active Human Gut Microbiota Differs from the Total Microbiota

(2011) Francesc Peris-Bondia et al.   PLoS One

Modulations of the Chicken Cecal Microbiome and Metagenome in Response to Anticoccidial and Growth Promoter Treatment

(2011) Jessica L. Danzeisen et al.   PLoS One

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Sampling and pyrosequencing methods for characterizing bacterial communities in the human gut using 16S sequence tags

(2010) Gary D Wu et al.   BMC MICROBIOLOGY

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Characterization of the Fecal Microbiome from Non-Human Wild Primates Reveals Species Specific Microbial Communities

(2010) Suleyman Yildirim et al.   PLoS One

A Brief History of the Antibiotic Era: Lessons Learned and Challenges for the Future

(2010) Rustam I. Aminov   Frontiers in Microbiology

PyNAST: a flexible tool for aligning sequences to a template alignment

(2009) J. G. Caporaso et al.   BIOINFORMATICS

Diversity, metabolism and microbial ecology of butyrate-producing bacteria from the human large intestine

(2009) Petra Louis et al.   FEMS MICROBIOLOGY LETTERS

Coamplification of Eukaryotic DNA with 16S rRNA Gene-Based PCR Primers: Possible Consequences for Population Fingerprinting of Complex Microbial Communities

(2008) Geert Huys et al.   CURRENT MICROBIOLOGY

A core gut microbiome in obese and lean twins

(2008) Peter J. Turnbaugh et al.   NATURE

Prevalence and Antimicrobial Resistance of Pathogenic Bacteria in Chicken and Guinea Fowl

(2008) A. Kilonzo-Nthenge et al.   POULTRY SCIENCE

Coated fatty acids alter virulence properties of Salmonella Typhimurium and decrease intestinal colonization of pigs

(2008) F. Boyen et al.   VETERINARY MICROBIOLOGY