Insights into the biodiversity of the gut microbiota of broiler chickens

Screening, identification, and characterization of a GH43 family β-xylosidase/α-arabinofuranosidase from a compost microbial metagenome

(2015) Tomohiko Matsuzawa et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Early life microbial colonization of the gut and intestinal development differ between genetically divergent broiler lines

(2015) Dirkjan Schokker et al.   BMC GENOMICS

The role of the gut microbiota in metabolic health

(2015) Aafke W. F. Janssen et al.   FASEB JOURNAL

Exploring the avian gut microbiota: current trends and future directions

(2015) David W. Waite et al.   Frontiers in Microbiology

Altered Egos: Antibiotic Effects on Food Animal Microbiomes

(2014) Heather K. Allen et al.   Annual Review of Microbiology

HTSeq--a Python framework to work with high-throughput sequencing data

(2014) S. Anders et al.   BIOINFORMATICS

Beta-Lactam Antibiotics Induce a Lethal Malfunctioning of the Bacterial Cell Wall Synthesis Machinery

(2014) Hongbaek Cho et al.   CELL

Extensive Microbial and Functional Diversity within the Chicken Cecal Microbiome

(2014) Martin J. Sergeant et al.   PLoS One

The Comprehensive Antibiotic Resistance Database

(2013) Andrew G. McArthur et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

eggNOG v4.0: nested orthology inference across 3686 organisms

(2013) Sean Powell et al.   NUCLEIC ACIDS RESEARCH

Assessing the Fecal Microbiota: An Optimized Ion Torrent 16S rRNA Gene-Based Analysis Protocol

(2013) Christian Milani et al.   PLoS One

Identification of chicken intestinal microbiota correlated with the efficiency of energy extraction from feed

(2013) Dragana Stanley et al.   VETERINARY MICROBIOLOGY

Functional Cloning and Characterization of Antibiotic Resistance Genes from the Chicken Gut Microbiome

(2012) Wei Zhou et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Functional interactions between the gut microbiota and host metabolism

(2012) Valentina Tremaroli et al.   NATURE

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Influence of penicillin on microbial diversity of the cecal microbiota in broiler chickens

(2012) P. Singh et al.   POULTRY SCIENCE

Changes in the caecal microflora of chickens following Clostridium perfringens challenge to induce necrotic enteritis

(2012) Dragana Stanley et al.   VETERINARY MICROBIOLOGY

RAPSearch2: a fast and memory-efficient protein similarity search tool for next-generation sequencing data

(2011) Y. Zhao et al.   BIOINFORMATICS

Intestinal microbiota in human health and disease: the impact of probiotics

(2011) Jacoline Gerritsen et al.   Genes and Nutrition

Human nutrition, the gut microbiome and the immune system

(2011) Andrew L. Kau et al.   NATURE

The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases

(2011) R. Caspi et al.   NUCLEIC ACIDS RESEARCH

Environmental and Gut Bacteroidetes: The Food Connection

(2011) François Thomas et al.   Frontiers in Microbiology

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

The integration of digestion and osmoregulation in the avian gut

(2009) Todd J. McWhorter et al.   BIOLOGICAL REVIEWS

Managing gut health through nutrition

(2009) M. Choct   BRITISH POULTRY SCIENCE

Effects of zinc bacitracin, bird age and access to range on bacterial microbiota in the ileum and caeca of broiler chickens

(2008) J. Gong et al.   JOURNAL OF APPLIED MICROBIOLOGY