The Functional Potential of the Rhizospheric Microbiome of an Invasive Tree Species, Acacia dealbata

Importance of soil legacy effects and successful mutualistic interactions during Australian acacia invasions in nutrient-poor environments

(2018) Johannes J. Le Roux et al.   JOURNAL OF ECOLOGY

Co-introduction vs ecological fitting as pathways to the establishment of effective mutualisms during biological invasions

(2017) Johannes J. Le Roux et al.   NEW PHYTOLOGIST

Soil nutritional status and biogeography influence rhizosphere microbial communities associated with the invasive tree Acacia dealbata

(2017) Casper N. Kamutando et al.   Scientific Reports

Antibiotics Resistance in Rhizobium: Type, Process, Mechanism and Benefit for Agriculture

(2016) Judith Naamala et al.   CURRENT MICROBIOLOGY

Genetics and Genomics of the Genus Amycolatopsis

(2016) Rashmi Kumari et al.   INDIAN JOURNAL OF MICROBIOLOGY

Functional traits dominate the diversity-related selection of bacterial communities in the rhizosphere

(2016) Yan Yan et al.   ISME Journal

Nitrogen-fixing bacterial communities in invasive legume nodules and associated soils are similar across introduced and native range populations in Australia

(2016) Christina Birnbaum et al.   JOURNAL OF BIOGEOGRAPHY

Balancing of B 6 Vitamers Is Essential for Plant Development and Metabolism in Arabidopsis

(2016) Maite Colinas et al.   PLANT CELL

Decoupling function and taxonomy in the global ocean microbiome

(2016) S. Louca et al.   SCIENCE

Genomics-informed isolation and characterization of a symbiotic Nanoarchaeota system from a terrestrial geothermal environment

(2016) Louie Wurch et al.   Nature Communications

MEGAN Community Edition - Interactive Exploration and Analysis of Large-Scale Microbiome Sequencing Data

(2016) Daniel H. Huson et al.   PLoS Computational Biology

The structure of legume–rhizobium interaction networks and their response to tree invasions

(2016) Johannes J. Le Roux et al.   AoB Plants

Structure and Function of the Bacterial Root Microbiota in Wild and Domesticated Barley

(2015) Davide Bulgarelli et al.   Cell Host & Microbe

Microbiota and Host Nutrition across Plant and Animal Kingdoms

(2015) Stéphane Hacquard et al.   Cell Host & Microbe

Host promiscuity in symbiont associations can influence exotic legume establishment and colonization of novel ranges

(2015) Metha M. Klock et al.   DIVERSITY AND DISTRIBUTIONS

CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes

(2015) Donovan H. Parks et al.   GENOME RESEARCH

Towards lignin consolidated bioprocessing: simultaneous lignin depolymerization and product generation by bacteria

(2015) Davinia Salvachúa et al.   GREEN CHEMISTRY

Taxonomy, Physiology, and Natural Products of Actinobacteria

(2015) Essaid Ait Barka et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Some South African Rubiaceae Tree Leaf Extracts Have Antimycobacterial Activity Against Pathogenic and Non-pathogenicMycobacteriumSpecies

(2015) Abimbola O. Aro et al.   PHYTOTHERAPY RESEARCH

The Soil Microbiome Influences Grapevine-Associated Microbiota

(2015) Iratxe Zarraonaindia et al.   mBio

Linkages of plant-soil feedbacks and underlying invasion mechanisms

(2015) Inderjit et al.   AoB Plants

Rhizosphere ecology of lumichrome and riboflavin, two bacterial signal molecules eliciting developmental changes in plants

(2015) Felix D. Dakora et al.   Frontiers in Plant Science

Anvi’o: an advanced analysis and visualization platform for ‘omics data

(2015) A. Murat Eren et al.   PeerJ

Proven and potential involvement of vitamins in interactions of plants with plant growth-promoting bacteria—an overview

(2014) Oskar A. Palacios et al.   BIOLOGY AND FERTILITY OF SOILS

Taxonomical and functional microbial community selection in soybean rhizosphere

(2014) Lucas W Mendes et al.   ISME Journal

Fast and sensitive protein alignment using DIAMOND

(2014) Benjamin Buchfink et al.   NATURE METHODS

Binning metagenomic contigs by coverage and composition

(2014) Johannes Alneberg et al.   NATURE METHODS

Soil and plant changing after invasion: The case of Acacia dealbata in a Mediterranean ecosystem

(2014) Lorenzo Lazzaro et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Description of a Riboflavin Biosynthetic Gene Variant Prevalent in the Phylum Proteobacteria

(2013) E. D. Brutinel et al.   JOURNAL OF BACTERIOLOGY

Co-invasion of South African ecosystems by an Australian legume and its rhizobial symbionts

(2013) Joice Ndlovu et al.   JOURNAL OF BIOGEOGRAPHY

Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences

(2013) Morgan G I Langille et al.   NATURE BIOTECHNOLOGY

Going back to the roots: the microbial ecology of the rhizosphere

(2013) Laurent Philippot et al.   NATURE REVIEWS MICROBIOLOGY

The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST)

(2013) Ross Overbeek et al.   NUCLEIC ACIDS RESEARCH

Quantitative divergence of the bacterial root microbiota in Arabidopsis thaliana relatives

(2013) K. Schlaeppi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Plant growth-promoting rhizobacteria and root system functioning

(2013) Jordan Vacheron et al.   Frontiers in Plant Science

Co-introduction of exotic rhizobia to the rhizosphere of the invasive legume Acacia saligna, an intercontinental study

(2012) João Apolinário Crisóstomo et al.   APPLIED SOIL ECOLOGY

Genome Sequence of Amycolatopsis sp. Strain ATCC 39116, a Plant Biomass-Degrading Actinomycete

(2012) J. R. Davis et al.   JOURNAL OF BACTERIOLOGY

Revealing structure and assembly cues for Arabidopsis root-inhabiting bacterial microbiota

(2012) Davide Bulgarelli et al.   NATURE

Quality control and preprocessing of metagenomic datasets

(2011) R. Schmieder et al.   BIOINFORMATICS

Niche construction by the invasive Asian knotweeds (species complex Fallopia): impact on activity, abundance and community structure of denitrifiers and nitrifiers

(2011) Nicolas Dassonville et al.   BIOLOGICAL INVASIONS

Functional genomics analysis of plant growth-promoting rhizobacterial traits involved in rhizosphere competence

(2011) Matthieu Barret et al.   BIOLOGY AND FERTILITY OF SOILS

The Type VI Secretion System: A Multipurpose Delivery System with a Phage-Like Machinery

(2011) Angela R. Records   MOLECULAR PLANT-MICROBE INTERACTIONS

Identifying biologically relevant differences between metagenomic communities

(2010) Donovan H. Parks et al.   BIOINFORMATICS

Prodigal: prokaryotic gene recognition and translation initiation site identification

(2010) Doug Hyatt et al.   BMC BIOINFORMATICS

Genetic characterization of root-nodule bacteria associated with Acacia salicina and A. stenophylla (Mimosaceae) across south-eastern Australia

(2010) M. S. Hoque et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Vitamin B6: A Molecule for Human Health?

(2010) Hanjo Hellmann et al.   MOLECULES

Reactive oxygen species and antioxidant machinery in abiotic stress tolerance in crop plants

(2010) Sarvajeet Singh Gill et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

The genus Acacia as invader: the characteristic case of Acacia dealbata Link in Europe

(2009) Paula Lorenzo et al.   ANNALS OF FOREST SCIENCE

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

InvasiveAndropogon gayanus(gamba grass) is an ecosystem transformer of nitrogen relations in Australian savanna

(2009) N. A. Rossiter-Rachor et al.   ECOLOGICAL APPLICATIONS

Riboflavin induces resistance in rice against Rhizoctonia solani via jasmonate-mediated priming of phenylpropanoid pathway

(2009) Parissa Taheri et al.   JOURNAL OF PLANT PHYSIOLOGY

Plant growth-promoting bacteria in the rhizo- and endosphere of plants: Their role, colonization, mechanisms involved and prospects for utilization

(2009) Stéphane Compant et al.   SOIL BIOLOGY & BIOCHEMISTRY

Statistical Methods for Detecting Differentially Abundant Features in Clinical Metagenomic Samples

(2009) James Robert White et al.   PLoS Computational Biology

Genome-wide analysis of the interaction between the endosymbiotic bacterium Wolbachia and its Drosophila host

(2008) Zhiyong Xi et al.   BMC GENOMICS

Preferences for 15N-ammonium, 15N-nitrate, and 15N-glycine differ among dominant exotic and subordinate native grasses from a California oak woodland

(2008) Zachary T. Aanderud et al.   ENVIRONMENTAL AND EXPERIMENTAL BOTANY