Shigella Phages Isolated during a Dysentery Outbreak Reveal Uncommon Structures and Broad Species Diversity

Phylogenomics and comparative genomic studies delineate six main clades within the family Enterobacteriaceae and support the reclassification of several polyphyletic members of the family

(2017) Seema Alnajar et al.   INFECTION GENETICS AND EVOLUTION

An inclusive Research Education Community (iREC): Impact of the SEA-PHAGES program on research outcomes and student learning

(2017) David I. Hanauer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Diversity of DNA viruses in effluents of membrane bioreactors in Traverse City, MI (USA) and La Grande Motte (France)

(2017) Evan O'Brien et al.   WATER RESEARCH

Microscopic Characterization of the Brazilian Giant Samba Virus

(2017) Jason Schrad et al.   Viruses-Basel

Antibiotic Concentrations Decrease during Wastewater Treatment but Persist at Low Levels in Reclaimed Water

(2017) Prachi Kulkarni et al.   International Journal of Environmental Research and Public Health

High affinity anchoring of the decoration protein pb10 onto the bacteriophage T5 capsid

(2017) Emeline Vernhes et al.   Scientific Reports

Plesiomonas shigelloides Revisited

(2016) J. Michael Janda et al.   CLINICAL MICROBIOLOGY REVIEWS

Evolved Populations ofShigella flexneriPhage Sf6 Acquire Large Deletions, Altered Genomic Architecture, and Faster Life Cycles

(2016) John A. Dover et al.   Genome Biology and Evolution

tRNAscan-SE On-line: integrating search and context for analysis of transfer RNA genes

(2016) Todd M. Lowe et al.   NUCLEIC ACIDS RESEARCH

Bacteriophage application to control the contaminated water with Shigella

(2016) Jin Woo Jun et al.   Scientific Reports

The Rising Dominance of Shigella sonnei: An Intercontinental Shift in the Etiology of Bacillary Dysentery

(2015) Corinne N. Thompson et al.   PLoS Neglected Tropical Diseases

Species-wide whole genome sequencing reveals historical global spread and recent local persistence in Shigella flexneri

(2015) Thomas R Connor et al.   eLife

Serotype-conversion in Shigella flexneri: identification of a novel bacteriophage, Sf101, from a serotype 7a strain

(2014) Richa Jakhetia et al.   BMC GENOMICS

Isolation and development of bioluminescent reporter phages for bacterial dysentery

(2014) D. A. Schofield et al.   EUROPEAN JOURNAL OF CLINICAL MICROBIOLOGY & INFECTIOUS DISEASES

The Genomes, Proteomes, and Structures of Three Novel Phages That Infect the Bacillus cereus Group and Carry Putative Virulence Factors

(2014) J. H. Grose et al.   JOURNAL OF VIROLOGY

Characterization and complete genome sequence of a novel N4-like bacteriophage, pSb-1 infecting Shigella boydii

(2014) Jin Woo Jun et al.   RESEARCH IN MICROBIOLOGY

Understanding the enormous diversity of bacteriophages: The tailed phages that infect the bacterial family Enterobacteriaceae

(2014) Julianne H. Grose et al.   VIROLOGY

Three-dimensional reconstructions of the bacteriophage CUS-3 virion reveal a conserved coat protein I-domain but a distinct tailspike receptor-binding domain

(2014) Kristin N. Parent et al.   VIROLOGY

A Broadly Implementable Research Course in Phage Discovery and Genomics for First-Year Undergraduate Students

(2014) T. C. Jordan et al.   mBio

An atomic model of brome mosaic virus using direct electron detection and real-space optimization

(2014) Zhao Wang et al.   Nature Communications

Isolation and genomic characterization of SfI, a serotype-converting bacteriophage of Shigella flexneri

(2013) Qiangzheng Sun et al.   BMC MICROBIOLOGY

Antimicrobial Resistance and Prevalence of Resistance Genes of Obligate Anaerobes Isolated From Periodontal Abscesses

(2013) Yi Xie et al.   JOURNAL OF PERIODONTOLOGY

Characterization and complete genome sequence of the Shigella bacteriophage pSf-1

(2013) Jin Woo Jun et al.   RESEARCH IN MICROBIOLOGY

Exploring the risks of phage application in the environment

(2013) Sean Meaden et al.   Frontiers in Microbiology

Stepwise molecular display utilizing icosahedral and helical complexes of phage coat and decoration proteins in the development of robust nanoscale display vehicles

(2012) Kristin N. Parent et al.   BIOMATERIALS

Comparison of the prevalence and changing resistance to nalidixic acid and ciprofloxacin of Shigella between Europe–America and Asia–Africa from 1998 to 2009

(2012) Bing Gu et al.   INTERNATIONAL JOURNAL OF ANTIMICROBIAL AGENTS

Genome Sequence of Shigella flexneri Serotype 5a Strain M90T Sm

(2012) N. T. Onodera et al.   JOURNAL OF BACTERIOLOGY

An Integrated Pipeline for de Novo Assembly of Microbial Genomes

(2012) Andrew Tritt et al.   PLoS One

Structural evolution of the P22-like phages: Comparison of Sf6 and P22 procapsid and virion architectures

(2012) Kristin N. Parent et al.   VIROLOGY

Isolation of Generalized Transducing Bacteriophages for Uropathogenic Strains of Escherichia coli

(2011) E. J. Battaglioli et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Structure of the Three N-Terminal Immunoglobulin Domains of the Highly Immunogenic Outer Capsid Protein from a T4-Like Bacteriophage

(2011) A. Fokine et al.   JOURNAL OF VIROLOGY

Functional analysis of the highly antigenic outer capsid protein, Hoc, a virus decoration protein from T4-like bacteriophages

(2010) Taheri Sathaliyawala et al.   MOLECULAR MICROBIOLOGY

The use of genomic signature distance between bacteriophages and their hosts displays evolutionary relationships and phage growth cycle determination

(2010) Patrick Deschavanne et al.   Virology Journal

Comparative study of enteric viruses, coliphages and indicator bacteria for evaluating water quality in a tropical high-altitude system

(2009) Ana C Espinosa et al.   Environmental Health

Tracing Ancestors and Relatives of Escherichia coli B, and the Derivation of B Strains REL606 and BL21(DE3)

(2009) Patrick Daegelen et al.   JOURNAL OF MOLECULAR BIOLOGY

Genome Sequences of Escherichia coli B strains REL606 and BL21(DE3)

(2009) Haeyoung Jeong et al.   JOURNAL OF MOLECULAR BIOLOGY

High Diversity of the Viral Community from an Antarctic Lake

(2009) A. Lopez-Bueno et al.   SCIENCE

Bacteriophage genomics

(2008) Graham F Hatfull   CURRENT OPINION IN MICROBIOLOGY

Insight into DNA and Protein Transport in Double-Stranded DNA Viruses: The Structure of Bacteriophage N4

(2008) Kyung H. Choi et al.   JOURNAL OF MOLECULAR BIOLOGY

VIPERdb2: an enhanced and web API enabled relational database for structural virology

(2008) M. Carrillo-Tripp et al.   NUCLEIC ACIDS RESEARCH

Sunlight, season, snowmelt, storm, and source affect E. coli populations in an artificially ponded stream

(2007) Richard L. Whitman et al.   SCIENCE OF THE TOTAL ENVIRONMENT