Evaluation of the genomic diversity of viruses infecting bacteria, archaea and eukaryotes using a common bioinformatic platform: steps towards a unified taxonomy

Taxonomy of prokaryotic viruses: 2017 update from the ICTV Bacterial and Archaeal Viruses Subcommittee

(2018) Evelien M. Adriaenssens et al.   ARCHIVES OF VIROLOGY

Viruses of archaea: Structural, functional, environmental and evolutionary genomics

(2018) Mart Krupovic et al.   VIRUS RESEARCH

The genomic underpinnings of eukaryotic virus taxonomy: creating a sequence-based framework for family-level virus classification

(2018) Pakorn Aiewsakun et al.   Microbiome

Virus taxonomy in the age of metagenomics

(2017) Peter Simmonds et al.   NATURE REVIEWS MICROBIOLOGY

The Phage Nucleus and Tubulin Spindle Are Conserved among Large Pseudomonas Phages

(2017) Vorrapon Chaikeeratisak et al.   Cell Reports

vConTACT: an iVirus tool to classify double-stranded DNA viruses that infect Archaea and Bacteria

(2017) Benjamin Bolduc et al.   PeerJ

Bacteriophage evolution differs by host, lifestyle and genome

(2017) Travis N. Mavrich et al.   Nature Microbiology

Environmental Viral Genomes Shed New Light on Virus-Host Interactions in the Ocean

(2017) Yosuke Nishimura et al.   mSphere

Taxonomy of prokaryotic viruses: 2016 update from the ICTV bacterial and archaeal viruses subcommittee

(2016) Evelien M. Adriaenssens et al.   ARCHIVES OF VIROLOGY

Taxonomy of prokaryotic viruses: update from the ICTV bacterial and archaeal viruses subcommittee

(2016) Mart Krupovic et al.   ARCHIVES OF VIROLOGY

Bipartite Network Analysis of the Archaeal Virosphere: Evolutionary Connections between Viruses and Capsidless Mobile Elements

(2016) Jaime Iranzo et al.   JOURNAL OF VIROLOGY

Uncovering Earth’s virome

(2016) David Paez-Espino et al.   NATURE

Role of bacteriophage T4 baseplate in regulating assembly and infection

(2016) Moh Lan Yap et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Network-Thinking: Graphs to Analyze Microbial Complexity and Evolution

(2016) Eduardo Corel et al.   TRENDS IN MICROBIOLOGY

The Double-Stranded DNA Virosphere as a Modular Hierarchical Network of Gene Sharing

(2016) Jaime Iranzo et al.   mBio

Structural remodeling of bacteriophage T4 and host membranes during infection initiation

(2015) Bo Hu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Integration of genomic and proteomic analyses in the classification of the Siphoviridae family

(2015) Evelien M. Adriaenssens et al.   VIROLOGY

A structured annotation frame for the transposable phages: A new proposed family “Saltoviridae” within the Caudovirales

(2015) Chantal Hulo et al.   VIROLOGY

Viral dark matter and virus–host interactions resolved from publicly available microbial genomes

(2015) Simon Roux et al.   eLife

Automated classification of tailed bacteriophages according to their neck organization

(2014) Anne Lopes et al.   BMC GENOMICS

Diversity of environmental single-stranded DNA phages revealed by PCR amplification of the partial major capsid protein

(2014) Max Hopkins et al.   ISME Journal

Phage lysis: Three steps, three choices, one outcome

(2014) Ryland Young   JOURNAL OF MICROBIOLOGY

Understanding the enormous diversity of bacteriophages: The tailed phages that infect the bacterial family Enterobacteriaceae

(2014) Julianne H. Grose et al.   VIROLOGY

Pandoraviruses: Amoeba Viruses with Genomes Up to 2.5 Mb Reaching That of Parasitic Eukaryotes

(2013) N. Philippe et al.   SCIENCE

Networks of evolutionary interactions underlying the polyphyletic origin of ssDNA viruses

(2013) Mart Krupovic   Current Opinion in Virology

A new proposed taxon for double-stranded DNA viruses, the order “Ligamenvirales”

(2012) David Prangishvili et al.   ARCHIVES OF VIROLOGY

Prokaryote viruses studied by electron microscopy

(2012) H.-W. Ackermann et al.   ARCHIVES OF VIROLOGY

What Does Virus Evolution Tell Us about Virus Origins?

(2011) E. C. Holmes   JOURNAL OF VIROLOGY

A modular view of the bacteriophage genomic space: identification of host and lifestyle marker modules

(2011) Gipsi Lima-Mendez et al.   RESEARCH IN MICROBIOLOGY

Bacteriophages and their genomes

(2011) Graham F Hatfull et al.   Current Opinion in Virology

Classification of Myoviridae bacteriophages using protein sequence similarity

(2009) Rob Lavigne et al.   BMC MICROBIOLOGY

ACLAME: A CLAssification of Mobile genetic Elements, update 2010

(2009) Raphaël Leplae et al.   NUCLEIC ACIDS RESEARCH

Reticulate Representation of Evolutionary and Functional Relationships between Phage Genomes

(2008) G. Lima-Mendez et al.   MOLECULAR BIOLOGY AND EVOLUTION

Virus evolution: how far does the double β-barrel viral lineage extend?

(2008) Mart Krupovič et al.   NATURE REVIEWS MICROBIOLOGY

X-ray crystal structure of the polymerase domain of the bacteriophage N4 virion RNA polymerase

(2008) Katsuhiko S. Murakami et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Unifying classical and molecular taxonomic classification: analysis of the Podoviridae using BLASTP-based tools

(2008) Rob Lavigne et al.   RESEARCH IN MICROBIOLOGY

Graph Clustering Via a Discrete Uncoupling Process

(2008) Stijn Van Dongen   SIAM JOURNAL ON MATRIX ANALYSIS AND APPLICATIONS