POTENCI: prediction of temperature, neighbor and pH-corrected chemical shifts for intrinsically disordered proteins

pepKalc: scalable and comprehensive calculation of electrostatic interactions in random coil polypeptides

(2018) Kamil Tamiola et al.   BIOINFORMATICS

Amino acid recognition for automatic resonance assignment of intrinsically disordered proteins

(2016) Alessandro Piai et al.   JOURNAL OF BIOMOLECULAR NMR

The Nearest-Neighbor Effect on Random-Coil NMR Chemical Shifts Demonstrated Using a Low-Complexity Amino-Acid Sequence

(2016) Tsai-Chen Chen et al.   PROTEIN AND PEPTIDE LETTERS

In situ high-resolution structure of the baseplate antenna complex in Chlorobaculum tepidum

(2016) Jakob Toudahl Nielsen et al.   Nature Communications

Intrinsically disordered proteins in cellular signalling and regulation

(2015) Peter E. Wright et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

NMRFAM-SPARKY: enhanced software for biomolecular NMR spectroscopy

(2014) Woonghee Lee et al.   BIOINFORMATICS

Classification of Intrinsically Disordered Regions and Proteins

(2014) Robin van der Lee et al.   CHEMICAL REVIEWS

VirtualSpectrum, a tool for simulating peak list for multi-dimensional NMR spectra

(2014) Jakob Toudahl Nielsen et al.   JOURNAL OF BIOMOLECULAR NMR

“CON-CON” assignment strategy for highly flexible intrinsically disordered proteins

(2014) Alessandro Piai et al.   JOURNAL OF BIOMOLECULAR NMR

Robust and highly accurate automatic NOESY assignment and structure determination with Rosetta

(2014) Zaiyong Zhang et al.   JOURNAL OF BIOMOLECULAR NMR

pH-dependent random coil 1H, 13C, and 15N chemical shifts of the ionizable amino acids: a guide for protein pK a measurements

(2014) Gerald Platzer et al.   JOURNAL OF BIOMOLECULAR NMR

Conformational Propensities of Intrinsically Disordered Proteins from NMR Chemical Shifts

(2013) Jaka Kragelj et al.   CHEMPHYSCHEM

High-dimensionality 13C direct-detected NMR experiments for the automatic assignment of intrinsically disordered proteins

(2013) Wolfgang Bermel et al.   JOURNAL OF BIOMOLECULAR NMR

Highly Efficient NMR Assignment of Intrinsically Disordered Proteins: Application to B- and T Cell Receptor Domains

(2013) Linnéa Isaksson et al.   PLoS One

Structural Analysis of the G-Box Domain of the Microcephaly Protein CPAP Suggests a Role in Centriole Architecture

(2013) Georgios N. Hatzopoulos et al.   STRUCTURE

Using NMR chemical shifts to calculate the propensity for structural order and disorder in proteins

(2012) Kamil Tamiola et al.   BIOCHEMICAL SOCIETY TRANSACTIONS

Determination of Secondary Structure Populations in Disordered States of Proteins Using Nuclear Magnetic Resonance Chemical Shifts

(2012) Carlo Camilloni et al.   BIOCHEMISTRY

Recent progress in NMR spectroscopy: Toward the study of intrinsically disordered proteins of increasing size and complexity

(2012) Isabella C. Felli et al.   IUBMB LIFE

TSAR: a program for automatic resonance assignment using 2D cross-sections of high dimensionality, high-resolution spectra

(2012) Anna Zawadzka-Kazimierczuk et al.   JOURNAL OF BIOMOLECULAR NMR

A New Algorithm for Reliable and General NMR Resonance Assignment

(2012) Elena Schmidt et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Blind Testing of Routine, Fully Automated Determination of Protein Structures from NMR Data

(2012) Antonio Rosato et al.   STRUCTURE

ncIDP-assign: a SPARKY extension for the effective NMR assignment of intrinsically disordered proteins

(2011) K. Tamiola et al.   BIOINFORMATICS

Structural Characterization of Hsp12, the Heat Shock Protein fromSaccharomyces cerevisiae, in Aqueous Solution Where It Is Intrinsically Disordered and in Detergent Micelles Where It Is Locally α-Helical

(2011) Kiran K. Singarapu et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Sequence correction of random coil chemical shifts: correlation between neighbor correction factors and changes in the Ramachandran distribution

(2011) Magnus Kjaergaard et al.   JOURNAL OF BIOMOLECULAR NMR

Random coil chemical shift for intrinsically disordered proteins: effects of temperature and pH

(2011) Magnus Kjaergaard et al.   JOURNAL OF BIOMOLECULAR NMR

SHIFTX2: significantly improved protein chemical shift prediction

(2011) Beomsoo Han et al.   JOURNAL OF BIOMOLECULAR NMR

Disordered proteins studied by chemical shifts

(2011) Magnus Kjaergaard et al.   PROGRESS IN NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY

Chemical shift prediction for protein structure calculation and quality assessment using an optimally parameterized force field

(2011) Jakob T. Nielsen et al.   PROGRESS IN NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY

Sequence-Specific Random Coil Chemical Shifts of Intrinsically Disordered Proteins

(2010) Kamil Tamiola et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Temperature-dependent structural changes in intrinsically disordered proteins: Formation of α-helices or loss of polyproline II?

(2010) Magnus Kjaergaard et al.   PROTEIN SCIENCE

Neighbor-Dependent Ramachandran Probability Distributions of Amino Acids Developed from a Hierarchical Dirichlet Process Model

(2010) Daniel Ting et al.   PLoS Computational Biology

TALOS+: a hybrid method for predicting protein backbone torsion angles from NMR chemical shifts

(2009) Yang Shen et al.   JOURNAL OF BIOMOLECULAR NMR

Automated protein structure calculation from NMR data

(2009) Mike P. Williamson et al.   JOURNAL OF BIOMOLECULAR NMR

Interpretable Numerical Descriptors of Amino Acid Space

(2009) Alexander G. Georgiev   JOURNAL OF COMPUTATIONAL BIOLOGY

Structural Characterization of the Natively Unfolded N-Terminal Domain of Human c-Src Kinase: Insights into the Role of Phosphorylation of the Unique Domain

(2009) Yolanda Pérez et al.   JOURNAL OF MOLECULAR BIOLOGY

Fast and Accurate Predictions of Protein NMR Chemical Shifts from Interatomic Distances

(2009) Kai J. Kohlhoff et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Accurate Random Coil Chemical Shifts from an Analysis of Loop Regions in Native States of Proteins

(2009) Alfonso De Simone et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Tandem and cryptic amino acid repeats accumulate in disordered regions of proteins

(2009) Michelle Simon et al.   GENOME BIOLOGY

Graphical interpretation of Boolean operators for protein NMR assignments

(2008) Dries Verdegem et al.   JOURNAL OF BIOMOLECULAR NMR

Consistent blind protein structure generation from NMR chemical shift data

(2008) Y. Shen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA