Cophylogenetic assessment of New World warblers (Parulidae) and their symbiotic feather mites (Proctophyllodidae)

Detecting ancient codispersals and host shifts by double dating of host and parasite phylogenies: Application in proctophyllodid feather mites associated with passerine birds

(2017) Pavel B. Klimov et al.   EVOLUTION

Cophylogenetic analyses reveal extensive host-shift speciation in a highly specialized and host-specific symbiont system

(2017) Jorge Doña et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

New feather mites of the genus Amerodectes Valim and Hernandes (Acariformes: Proctophyllodidae) from passerines (Aves: Passeriformes) in Georgia, USA

(2017) SERGEY V. MIRONOV et al.   ZOOTAXA

Plumage Genes and Little Else Distinguish the Genomes of Hybridizing Warblers

(2016) David P.L. Toews et al.   CURRENT BIOLOGY

Phylogenetic framework for coevolutionary studies: a compass for exploring jungles of tangled trees

(2016) Andrés Martínez-Aquino   Current Zoology

Global associations between birds and vane-dwelling feather mites

(2016) Jorge Doña et al.   ECOLOGY

Cophylogenetic analysis of New World ground-doves (Aves: Columbidae) and their parasitic wing lice (Insecta: Phthiraptera: Columbicola )

(2016) Andrew D. Sweet et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Evolutionary relationships between digeneans of the family Brachycladiidae Odhner, 1905 and their marine mammal hosts: A cophylogenetic study

(2016) Natalia Fraija-Fernández et al.   PARASITOLOGY INTERNATIONAL

Computational Performance and Statistical Accuracy of *BEAST and Comparisons with Other Methods

(2016) Huw A. Ogilvie et al.   SYSTEMATIC BIOLOGY

A previously undocumented hybrid New World Warbler (Setophaga pensylvanicaxS. magnolia) captured at Long Point, Ontario

(2016) Kenneth G. D. Burrell et al.   Wilson Journal of Ornithology

rotl: an R package to interact with the Open Tree of Life data

(2016) François Michonneau et al.   Methods in Ecology and Evolution

Phylogenetic framework for coevolutionary studies: a compass for exploring jungles of tangled trees

(2016) Andrés Martínez-Aquino   Current Zoology

New insights into New World biogeography: An integrated view from the phylogeny of blackbirds, cardinals, sparrows, tanagers, warblers, and allies

(2015) F. Keith Barker et al.   AUK

The BPP program for species tree estimation and species delimitation

(2015) Ziheng Yang   Current Zoology

DNA barcoding and minibarcoding as a powerful tool for feather mite studies

(2015) Jorge Doña et al.   Molecular Ecology Resources

Evolution in action: climate change, biodiversity dynamics and emerging infectious disease

(2015) E. P. Hoberg et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Synthesis of phylogeny and taxonomy into a comprehensive tree of life

(2015) Cody E. Hinchliff et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The BPP program for species tree estimation and species delimitation

(2015) Ziheng Yang   Current Zoology

Understanding Host-Switching by Ecological Fitting

(2015) Sabrina B. L. Araujo et al.   PLoS One

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Differences in speciation progress in feather mites (Analgoidea) inhabiting the same host: the case of Zachvatkinia and Alloptes living on arctic and long-tailed skuas

(2014) Miroslawa Dabert et al.   EXPERIMENTAL AND APPLIED ACAROLOGY

From cuckoos to chickens: a caught-in-the-act case of host shift in feather mites (Arachnida: Acari: Psoroptoididae)

(2014) Fabio Akashi Hernandes et al.   PARASITOLOGY RESEARCH

BEAST 2: A Software Platform for Bayesian Evolutionary Analysis

(2014) Remco Bouckaert et al.   PLoS Computational Biology

A general species delimitation method with applications to phylogenetic placements

(2013) Jiajie Zhang et al.   BIOINFORMATICS

Ecology, song similarity and phylogeny predict natural hybridization in an avian family

(2013) Pamela M. Willis et al.   EVOLUTIONARY ECOLOGY

Cophylogeny of Quill Mites from the GenusSyringophilopsis(Acari: Syringophilidae) and their North American Passerine Hosts

(2013) Sarah A. Hendricks et al.   JOURNAL OF PARASITOLOGY

Cospeciation vs host-shift speciation: methods for testing, evidence from natural associations and relation to coevolution

(2013) D. M. de Vienne et al.   NEW PHYTOLOGIST

PACo: A Novel Procrustes Application to Cophylogenetic Analysis

(2013) Juan Antonio Balbuena et al.   PLoS One

Going to Extremes: Contrasting Rates of Diversification in a Recent Radiation of New World Passerine Birds

(2012) F. Keith Barker et al.   SYSTEMATIC BIOLOGY

There and back again: switching between host orders by avian body lice (Ischnocera: Goniodidae)

(2011) KEVIN P. JOHNSON et al.   BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

A hitchhikers guide to the Galápagos: co-phylogeography of Galápagos mockingbirds and their parasites

(2011) Jan Štefka et al.   BMC EVOLUTIONARY BIOLOGY

Jane: a new tool for the cophylogeny reconstruction problem

(2010) Chris Conow et al.   Algorithms for Molecular Biology

phangorn: phylogenetic analysis in R

(2010) Klaus Peter Schliep   BIOINFORMATICS

A parameter-adaptive dynamic programming approach for inferring cophylogenies

(2010) Daniel Merkle et al.   BMC BIOINFORMATICS

CALIBRATING DIVERGENCE TIMES ON SPECIES TREES VERSUS GENE TREES: IMPLICATIONS FOR SPECIATION HISTORY OF APHELOCOMA JAYS

(2010) John E. McCormack et al.   EVOLUTION

A comprehensive multilocus phylogeny for the wood-warblers and a revised classification of the Parulidae (Aves)

(2010) Irby J. Lovette et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Bayesian Inference of Species Trees from Multilocus Data

(2009) J. Heled et al.   MOLECULAR BIOLOGY AND EVOLUTION

Origin and higher-level relationships of psoroptidian mites (Acari: Astigmata: Psoroptidia): Evidence from three nuclear genes

(2008) Pavel B. Klimov et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION