Reinforcing the Egg-Timer: Recruitment of Novel Lophotrochozoa Homeobox Genes to Early and Late Development in the Pacific Oyster

Comparative Genomics of Flatworms (Platyhelminthes) Reveals Shared Genomic Features of Ecto- and Endoparastic Neodermata

(2014) Christoph Hahn et al.   Genome Biology and Evolution

Activities at the Universal Protein Resource (UniProt)

(2014)   NUCLEIC ACIDS RESEARCH

Genomic evidence for ameiotic evolution in the bdelloid rotifer Adineta vaga

(2013) Jean-François Flot et al.   NATURE

The genomes of four tapeworm species reveal adaptations to parasitism

(2013) Isheng J. Tsai et al.   NATURE

The genome of the hydatid tapeworm Echinococcus granulosus

(2013) Huajun Zheng et al.   NATURE GENETICS

A Genome-Wide Survey of Genes Encoding Transcription Factors in the Japanese Pearl Oyster,Pinctada fucata: I. Homeobox Genes

(2013) Yoshiaki Morino et al.   ZOOLOGICAL SCIENCE

A genome-wide view of transcription factor gene diversity in chordate evolution: less gene loss in amphioxus?

(2012) J. Paps et al.   Briefings in Functional Genomics

Developmental Milestones Punctuate Gene Expression in the Caenorhabditis Embryo

(2012) Michal Levin et al.   DEVELOPMENTAL CELL

Draft Genome of the Pearl Oyster Pinctada fucata: A Platform for Understanding Bivalve Biology

(2012) T. Takeuchi et al.   DNA RESEARCH

Widespread Recurrent Evolution of Genomic Features

(2012) I. Maeso et al.   Genome Biology and Evolution

Proto-genes and de novo gene birth

(2012) Anne-Ruxandra Carvunis et al.   NATURE

The oyster genome reveals stress adaptation and complexity of shell formation

(2012) Guofan Zhang et al.   NATURE

Insights into bilaterian evolution from three spiralian genomes

(2012) Oleg Simakov et al.   NATURE

Evolution of homeobox genes

(2012) Peter W. H. Holland   Wiley Interdisciplinary Reviews-Developmental Biology

Evolution of the Alx homeobox gene family: parallel retention and independent loss of the vertebrate Alx3 gene

(2011) Imelda M. McGonnell et al.   EVOLUTION & DEVELOPMENT

HomeoDB2: functional expansion of a comparative homeobox gene database for evolutionary developmental biology

(2011) Ying-fu Zhong et al.   EVOLUTION & DEVELOPMENT

Contrasting 5' and 3' Evolutionary Histories and Frequent Evolutionary Convergence in Meis/hth Gene Structures

(2011) Manuel Irimia et al.   Genome Biology and Evolution

Comparative transcriptome analysis reveals vertebrate phylotypic period during organogenesis

(2011) Naoki Irie et al.   Nature Communications

Gene expression divergence recapitulates the developmental hourglass model

(2010) Alex T. Kalinka et al.   NATURE

A phylogenetically based transcriptome age index mirrors ontogenetic divergence patterns

(2010) Tomislav Domazet-Lošo et al.   NATURE

The Amphimedon queenslandica genome and the evolution of animal complexity

(2010) Mansi Srivastava et al.   NATURE

The homeodomain complement of the ctenophore Mnemiopsis leidyi suggests that Ctenophora and Porifera diverged prior to the ParaHoxozoa

(2010) Joseph F Ryan et al.   EvoDevo

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

The Schistosoma japonicum genome reveals features of host–parasite interplay

(2009)   NATURE

The genome of the blood fluke Schistosoma mansoni

(2009) Matthew Berriman et al.   NATURE

The Pfam protein families database

(2009) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

Comprehensive survey and classification of homeobox genes in the genome of amphioxus, Branchiostoma floridae

(2008) Naohito Takatori et al.   DEVELOPMENT GENES AND EVOLUTION

HomeoDB: a database of homeobox gene diversity

(2008) Ying-Fu Zhong et al.   EVOLUTION & DEVELOPMENT

Convergent Evolution of Clustering of Iroquois Homeobox Genes across Metazoans

(2008) M. Irimia et al.   MOLECULAR BIOLOGY AND EVOLUTION

An Improved General Amino Acid Replacement Matrix

(2008) S. Q. Le et al.   MOLECULAR BIOLOGY AND EVOLUTION

The Trichoplax genome and the nature of placozoans

(2008) Mansi Srivastava et al.   NATURE

Assembling the lophotrochozoan (=spiralian) tree of life

(2008) G. Giribet   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

The Urbilaterian Super-Hox cluster

(2008) Thomas Butts et al.   TRENDS IN GENETICS