The Rise and Fall of TRP-N, an Ancient Family of Mechanogated Ion Channels, in Metazoa

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Finding the missing honey bee genes: lessons learned from a genome upgrade

(2014) Christine G Elsik et al.   BMC GENOMICS

Deep Conservation of Human Protein Tandem Repeats within the Eukaryotes

(2014) Elke Schaper et al.   MOLECULAR BIOLOGY AND EVOLUTION

The ctenophore genome and the evolutionary origins of neural systems

(2014) Leonid L. Moroz et al.   NATURE

An atomic-resolution view of neofunctionalization in the evolution of apicomplexan lactate dehydrogenases

(2014) Jeffrey I Boucher et al.   eLife

Ankyrin domains across the Tree of Life

(2014) Kristin K. Jernigan et al.   PeerJ

Quantification and functional analysis of modular protein evolution in a dense phylogenetic tree

(2013) Andrew D. Moore et al.   BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS

DoMosaics: software for domain arrangement visualization and domain-centric analysis of proteins

(2013) A. D. Moore et al.   BIOINFORMATICS

Mechano-Gated Ion Channels in Sensory Systems

(2013) Patrick Delmas et al.   CELL

A NOMPC-Dependent Membrane-Microtubule Connector Is a Candidate for the Gating Spring in Fly Mechanoreceptors

(2013) Xin Liang et al.   CURRENT BIOLOGY

Mechanotransduction: The Elusive Hair Cell Transduction Channel Revealed?

(2013) Clive P. Morgan et al.   CURRENT BIOLOGY

Subfunctionalization via Adaptive Evolution Influenced by Genomic Context: The Case of Histone Chaperones ASF1a and ASF1b

(2013) Federico Abascal et al.   MOLECULAR BIOLOGY AND EVOLUTION

Deep metazoan phylogeny: When different genes tell different stories

(2013) Tetyana Nosenko et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

TMC1 and TMC2 Are Components of the Mechanotransduction Channel in Hair Cells of the Mammalian Inner Ear

(2013) Bifeng Pan et al.   NEURON

The genome portal of the Department of Energy Joint Genome Institute: 2014 updates

(2013) Henrik Nordberg et al.   NUCLEIC ACIDS RESEARCH

Ensembl 2014

(2013) Paul Flicek et al.   NUCLEIC ACIDS RESEARCH

The Genome of the Ctenophore Mnemiopsis leidyi and Its Implications for Cell Type Evolution

(2013) J. F. Ryan et al.   SCIENCE

The Nematocyst: a molecular map of the Cnidarian stinging organelle

(2012) Anna Beckmann et al.   INTERNATIONAL JOURNAL OF DEVELOPMENTAL BIOLOGY

Xenbase: expansion and updates of the Xenopus model organism database

(2012) Christina James-Zorn et al.   NUCLEIC ACIDS RESEARCH

Repeat or not repeat?—Statistical validation of tandem repeat prediction in genomic sequences

(2012) Elke Schaper et al.   NUCLEIC ACIDS RESEARCH

Evolutionary Dynamics on Protein Bi-stability Landscapes can Potentially Resolve Adaptive Conflicts

(2012) Tobias Sikosek et al.   PLoS Computational Biology

Java bioinformatics analysis web services for multiple sequence alignment--JABAWS:MSA

(2011) P. V. Troshin et al.   BIOINFORMATICS

ProtTest 3: fast selection of best-fit models of protein evolution

(2011) Diego Darriba et al.   BIOINFORMATICS

Smed454 dataset: unravelling the transcriptome of Schmidtea mediterranea

(2011) Josep F Abril et al.   BMC GENOMICS

The odds of duplicate gene persistence after polyploidization

(2011) Frédéric JJ Chain et al.   BMC GENOMICS

NompC TRP Channel Is Essential for Drosophila Sound Receptor Function

(2011) Thomas Effertz et al.   CURRENT BIOLOGY

The Dynamics and Evolutionary Potential of Domain Loss and Emergence

(2011) A. D. Moore et al.   MOLECULAR BIOLOGY AND EVOLUTION

Using the Acropora digitifera genome to understand coral responses to environmental change

(2011) Chuya Shinzato et al.   NATURE

The Pfam protein families database

(2011) M. Punta et al.   NUCLEIC ACIDS RESEARCH

HMMER web server: interactive sequence similarity searching

(2011) R. D. Finn et al.   NUCLEIC ACIDS RESEARCH

The Cambrian Conundrum: Early Divergence and Later Ecological Success in the Early History of Animals

(2011) D. H. Erwin et al.   SCIENCE

Resolving Difficult Phylogenetic Questions: Why More Sequences Are Not Enough

(2011) Hervé Philippe et al.   PLOS BIOLOGY

Variable Tandem Repeats Accelerate Evolution of Coding and Regulatory Sequences

(2010) Rita Gemayel et al.   Annual Review of Genetics

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

NOMPC, a member of the TRP channel family, localizes to the tubular body and distal cilium of Drosophila campaniform and chordotonal receptor cells

(2010) Xin Liang et al.   Cytoskeleton

The dynamic genome of Hydra

(2010) Jarrod A. Chapman et al.   NATURE

The Amphimedon queenslandica genome and the evolution of animal complexity

(2010) Mansi Srivastava et al.   NATURE

Mutational effects and the evolution of new protein functions

(2010) Misha Soskine et al.   NATURE REVIEWS GENETICS

Multi-Harmony: detecting functional specificity from sequence alignment

(2010) B. W. Brandt et al.   NUCLEIC ACIDS RESEARCH

The cnidarian nematocyst: a miniature extracellular matrix within a secretory vesicle

(2010) Suat Özbek   PROTOPLASMA

2× genomes - depth does matter

(2010) Michel C Milinkovitch et al.   GENOME BIOLOGY

PhyloBayes 3: a Bayesian software package for phylogenetic reconstruction and molecular dating

(2009) Nicolas Lartillot et al.   BIOINFORMATICS

Jalview Version 2--a multiple sequence alignment editor and analysis workbench

(2009) A. M. Waterhouse et al.   BIOINFORMATICS

Phylogenetic-Signal Dissection of Nuclear Housekeeping Genes Supports the Paraphyly of Sponges and the Monophyly of Eumetazoa

(2009) E. A. Sperling et al.   MOLECULAR BIOLOGY AND EVOLUTION

Concatenated Analysis Sheds Light on Early Metazoan Evolution and Fuels a Modern “Urmetazoon” Hypothesis

(2009) Bernd Schierwater et al.   PLOS BIOLOGY

Compagen, a comparative genomics platform for early branching metazoan animals, reveals early origins of genes regulating stem-cell differentiation

(2008) Georg Hemmrich et al.   BIOESSAYS

TRPC channel activation by extracellular thioredoxin

(2008) Shang-Zhong Xu et al.   NATURE

The Trichoplax genome and the nature of placozoans

(2008) Mansi Srivastava et al.   NATURE

Broad phylogenomic sampling improves resolution of the animal tree of life

(2008) Casey W. Dunn et al.   NATURE

Arrangements in the modular evolution of proteins

(2008) Andrew D. Moore et al.   TRENDS IN BIOCHEMICAL SCIENCES