A Novel Terminal-Repeat Retrotransposon in Miniature (TRIM) Is Massively Expressed inEchinococcus multilocularisStem Cells

Host insulin stimulates Echinococcus multilocularis insulin signalling pathways and larval development

(2014) Sarah Hemer et al.   BMC BIOLOGY

Primate-specific endogenous retrovirus-driven transcription defines naive-like stem cells

(2014) Jichang Wang et al.   NATURE

Deep transcriptome profiling of mammalian stem cells supports a regulatory role for retrotransposons in pluripotency maintenance

(2014) Alexandre Fort et al.   NATURE GENETICS

How might flukes and tapeworms maintain genome integrity without a canonical piRNA pathway?

(2014) Danielle E. Skinner et al.   TRENDS IN PARASITOLOGY

The unique stem cell sysem of the immortal larva of the human parasite Echinococcus multilocularis

(2014) Uriel Koziol et al.   EvoDevo

featureCounts: an efficient general purpose program for assigning sequence reads to genomic features

(2013) Y. Liao et al.   BIOINFORMATICS

Gene regulation by the act of long non-coding RNA transcription

(2013) Aleksandra E Kornienko et al.   BMC BIOLOGY

Anatomy and development of the larval nervous system in Echinococcus multilocularis

(2013) Uriel Koziol et al.   Frontiers in Zoology

Molecular phylogeny of the genus Taenia (Cestoda: Taeniidae): Proposals for the resurrection of Hydatigera Lamarck, 1816 and the creation of a new genus Versteria

(2013) Minoru Nakao et al.   INTERNATIONAL JOURNAL FOR PARASITOLOGY

Adult somatic stem cells in the human parasite Schistosoma mansoni

(2013) James J. Collins III et al.   NATURE

The genomes of four tapeworm species reveal adaptations to parasitism

(2013) Isheng J. Tsai et al.   NATURE

Biochemical Characterization of Novel Retroviral Integrase Proteins

(2013) Allison Ballandras-Colas et al.   PLoS One

U1snRNP-mediated suppression of polyadenylation in conjunction with the RNA structure controls poly (A) site selection in foamy viruses

(2013) Eva-Maria Schrom et al.   Retrovirology

Functional genomic characterization of neoblast-like stem cells in larval Schistosoma mansoni

(2013) Bo Wang et al.   eLife

Stem cell systems and regeneration in planaria

(2012) Jochen C. Rink   DEVELOPMENT GENES AND EVOLUTION

High-fidelity promoter profiling reveals widespread alternative promoter usage and transposon-driven developmental gene expression

(2012) P. Batut et al.   GENOME RESEARCH

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

(2012) Cole Trapnell et al.   Nature Protocols

Metazoan promoters: emerging characteristics and insights into transcriptional regulation

(2012) Boris Lenhard et al.   NATURE REVIEWS GENETICS

A Novel Family of Terminal-Repeat Retrotransposon in Miniature (TRIM) in the Genome of the Red Harvester Ant, Pogonomyrmex barbatus

(2012) Yihong Zhou et al.   PLoS One

HERV-H RNA is abundant in human embryonic stem cells and a precise marker for pluripotency

(2012) Federico A Santoni et al.   Retrovirology

A Transcriptomic Analysis of Echinococcus granulosus Larval Stages: Implications for Parasite Biology and Host Adaptation

(2012) John Parkinson et al.   PLoS Neglected Tropical Diseases

Transposable elements reveal a stem cell-specific class of long noncoding RNAs

(2012) David Kelley et al.   GENOME BIOLOGY

Uniting Germline and Stem Cells: The Function of Piwi Proteins and the piRNA Pathway in Diverse Organisms

(2011) Celina Juliano et al.   Annual Review of Genetics

MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

(2011) K. Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

Phylogenetic relationships within Echinococcus and Taenia tapeworms (Cestoda: Taeniidae): An inference from nuclear protein-coding genes

(2011) Jenny Knapp et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Cestode genomics - progress and prospects for advancing basic and applied aspects of flatworm biology

(2011) P. D. OLSON et al.   PARASITE IMMUNOLOGY

Selfish genetic elements, genetic conflict, and evolutionary innovation

(2011) J. H. Werren   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Development of new molecular markers for the Colletotrichum genus using RetroCl1 sequences

(2011) Leandro Vieira dos Santos et al.   WORLD JOURNAL OF MICROBIOLOGY & BIOTECHNOLOGY

Stepwise Histone Replacement by SWR1 Requires Dual Activation with Histone H2A.Z and Canonical Nucleosome

(2010) Ed Luk et al.   CELL

A conserved germline multipotency program

(2010) C. E. Juliano et al.   DEVELOPMENT

Ty1 integrase overexpression leads to integration of non-Ty1 DNA fragments into the genome of Saccharomyces cerevisiae

(2010) Anna A. Friedl et al.   MOLECULAR GENETICS AND GENOMICS

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Characterization of a putative hsp70 pseudogene transcribed in protoscoleces and adult worms of Echinococcus granulosus

(2009) Uriel Koziol et al.   GENE

Endogenous retroviral LTRs as promoters for human genes: A critical assessment

(2009) Carla J. Cohen et al.   GENE

On the Estimation of the Insertion Time of LTR Retrotransposable Elements

(2009) T.E. Kijima et al.   MOLECULAR BIOLOGY AND EVOLUTION

The genome of the blood fluke Schistosoma mansoni

(2009) Matthew Berriman et al.   NATURE

The regulated retrotransposon transcriptome of mammalian cells

(2009) Geoffrey J Faulkner et al.   NATURE GENETICS

Long non-coding RNAs: insights into functions

(2009) Tim R. Mercer et al.   NATURE REVIEWS GENETICS

Characterization and inhibition of a p38-like mitogen-activated protein kinase (MAPK) from Echinococcus multilocularis: Antiparasitic activities of p38 MAPK inhibitors

(2008) Verena Gelmedin et al.   BIOCHEMICAL PHARMACOLOGY

Pumilio genes from the Platyhelminthes

(2008) Uriel Koziol et al.   DEVELOPMENT GENES AND EVOLUTION

Ectopic gene conversions in the human genome

(2008) David Benovoy et al.   GENOMICS

Cassandra retrotransposons carry independently transcribed 5S RNA

(2008) R. Kalendar et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The PIWI proteins SMEDWI-2 and SMEDWI-3 are required for stem cell function and piRNA expression in planarians

(2008) D. Palakodeti et al.   RNA

The Argonaute protein family

(2008) Julia Höck et al.   GENOME BIOLOGY

Molecular characterisation of a second structurally unusual AR-Smad without an MH1 domain and a Smad4 orthologue from Echinococcus multilocularis☆

(2007) R ZAVALAGONGORA et al.   INTERNATIONAL JOURNAL FOR PARASITOLOGY