Identification of novel mutations in FFPE lung adenocarcinomas using DEPArray sorting technology and next-generation sequencing

Molecular biomarkers for lung adenocarcinoma

(2017) Olivier Calvayrac et al.   EUROPEAN RESPIRATORY JOURNAL

Assessment of the quality of DNA from various formalin-fixed paraffin-embedded (FFPE) tissues and the use of this DNA for next-generation sequencing (NGS) with no artifactual mutation

(2017) Naoki Einaga et al.   PLoS One

Challenging the Cancer Molecular Stratification Dogma: Intratumoral Heterogeneity Undermines Consensus Molecular Subtypes and Potential Diagnostic Value in Colorectal Cancer

(2016) Philip D. Dunne et al.   CLINICAL CANCER RESEARCH

Post-mortem testing; germline BRCA1/2 variant detection using archival FFPE non-tumor tissue. A new paradigm in genetic counseling

(2016) Annabeth Høgh Petersen et al.   EUROPEAN JOURNAL OF HUMAN GENETICS

Digital Sorting of Pure Cell Populations Enables Unambiguous Genetic Analysis of Heterogeneous Formalin-Fixed Paraffin-Embedded Tumors by Next Generation Sequencing

(2016) Chiara Bolognesi et al.   Scientific Reports

Variable expression levels of keratin and vimentin reveal differential EMT status of circulating tumor cells and correlation with clinical characteristics and outcome of patients with metastatic breast cancer

(2015) Hara Polioudaki et al.   BMC CANCER

Accuracy of Molecular Data Generated with FFPE Biospecimens: Lessons from the Literature

(2015) S. R. Greytak et al.   CANCER RESEARCH

ClinVar: public archive of interpretations of clinically relevant variants

(2015) Melissa J. Landrum et al.   NUCLEIC ACIDS RESEARCH

Clinical applications of next generation sequencing in cancer: from panels, to exomes, to genomes

(2015) Tony Shen et al.   Frontiers in Genetics

Reporting Tumor Molecular Heterogeneity in Histopathological Diagnosis

(2014) Andrea Mafficini et al.   PLoS One

Detection and recovery of circulating colon cancer cells using a dielectrophoresis-based device: KRAS mutation status in pure CTCs

(2013) Francesco Fabbri et al.   CANCER LETTERS

Reducing Sequence Artifacts in Amplicon-Based Massively Parallel Sequencing of Formalin-Fixed Paraffin-Embedded DNA by Enzymatic Depletion of Uracil-Containing Templates

(2013) H. Do et al.   CLINICAL CHEMISTRY

Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration

(2012) H. Thorvaldsdottir et al.   BRIEFINGS IN BIOINFORMATICS

ANNOVAR: functional annotation of genetic variants from high-throughput sequencing data

(2010) K. Wang et al.   NUCLEIC ACIDS RESEARCH

High-quality genomic DNA extraction from formalin-fixed and paraffin-embedded samples deparaffinized using mineral oil

(2009) Jianghai Lin et al.   ANALYTICAL BIOCHEMISTRY