Assessment of the quality of DNA from various formalin-fixed paraffin-embedded (FFPE) tissues and the use of this DNA for next-generation sequencing (NGS) with no artifactual mutation

Pitfalls of DNA Quantification Using DNA-Binding Fluorescent Dyes and Suggested Solutions

(2016) Yuki Nakayama et al.   PLoS One

Whole exome sequencing (WES) on formalin-fixed, paraffin-embedded (FFPE) tumor tissue in gastrointestinal stromal tumors (GIST)

(2015) Annalisa Astolfi et al.   BMC GENOMICS

Targeted or whole genome sequencing of formalin fixed tissue samples: potential applications in cancer genomics

(2015) Sarah Munchel et al.   Oncotarget

Amplicon Sequencing of Colorectal Cancer: Variant Calling in Frozen and Formalin-Fixed Samples

(2015) Johannes Betge et al.   PLoS One

Comparison of Accuracy of Whole-Exome Sequencing with Formalin-Fixed Paraffin-Embedded and Fresh Frozen Tissue Samples

(2015) Ensel Oh et al.   PLoS One

Measuring the Formaldehyde Protein–DNA Cross-Link Reversal Rate

(2014) Julia Kennedy-Darling et al.   ANALYTICAL CHEMISTRY

Sequence artefacts in a prospective series of formalin-fixed tumours tested for mutations in hotspot regions by massively parallel sequencing

(2014) Stephen Q Wong et al.   BMC Medical Genomics

Sequence Artifacts in DNA from Formalin-Fixed Tissues: Causes and Strategies for Minimization

(2014) H. Do et al.   CLINICAL CHEMISTRY

Lessons from the Cancer Genome

(2013) Levi A. Garraway et al.   CELL

Reducing Sequence Artifacts in Amplicon-Based Massively Parallel Sequencing of Formalin-Fixed Paraffin-Embedded DNA by Enzymatic Depletion of Uracil-Containing Templates

(2013) H. Do et al.   CLINICAL CHEMISTRY

APOBEC3B mutagenesis in cancer

(2013) Kawai J Kuong et al.   NATURE GENETICS

Cancer Genome Landscapes

(2013) B. Vogelstein et al.   SCIENCE

Targeted-capture massively-parallel sequencing enables robust detection of clinically informative mutations from formalin-fixed tumours

(2013) Stephen Q. Wong et al.   Scientific Reports

Intratumor Heterogeneity and Branched Evolution Revealed by Multiregion Sequencing

(2012) Marco Gerlinger et al.   NEW ENGLAND JOURNAL OF MEDICINE

Metastatic colorectal cancer KRAS genotyping in routine practice: results and pitfalls

(2011) Aude Lamy et al.   MODERN PATHOLOGY

Structural Characterization of Formaldehyde-Induced Cross-Links Between Amino Acids and Deoxynucleosides and Their Oligomers

(2010) Kun Lu et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Distant metastasis occurs late during the genetic evolution of pancreatic cancer

(2010) Shinichi Yachida et al.   NATURE