Long-term in situ permafrost thaw effects on bacterial communities and potential aerobic respiration

New insights into the role of microbial community composition in driving soil respiration rates

(2018) Yu-Rong Liu et al.   SOIL BIOLOGY & BIOCHEMISTRY

Microbial diversity and soil functions

(2017) P. Nannipieri et al.   EUROPEAN JOURNAL OF SOIL SCIENCE

Experimentally increased nutrient availability at the permafrost thaw front selectively enhances biomass production of deep-rooting subarctic peatland species

(2017) Frida Keuper et al.   GLOBAL CHANGE BIOLOGY

Poorly known microbial taxa dominate the microbiome of permafrost thaw ponds

(2017) Christian Wurzbacher et al.   ISME Journal

Microbial survival strategies in ancient permafrost: insights from metagenomics

(2017) Rachel Mackelprang et al.   ISME Journal

Rhea: a transparent and modular R pipeline for microbial profiling based on 16S rRNA gene amplicons

(2017) Ilias Lagkouvardos et al.   PeerJ

Effects of habitat constraints on soil microbial community function

(2017) Naoise Nunan et al.   Scientific Reports

Permafrost Meta-Omics and Climate Change

(2016) Rachel Mackelprang et al.   Annual Review of Earth and Planetary Sciences

Climate change effects on peatland decomposition and porewater dissolved organic carbon biogeochemistry

(2016) Catherine M. Dieleman et al.   BIOGEOCHEMISTRY

Loss of testate amoeba functional diversity with increasing frost intensity across a continental gradient reduces microbial activity in peatlands

(2016) Vincent E.J. Jassey et al.   EUROPEAN JOURNAL OF PROTISTOLOGY

Least-Squares Means: TheRPackagelsmeans

(2016) Russell V. Lenth   Journal of Statistical Software

VSEARCH: a versatile open source tool for metagenomics

(2016) Torbjørn Rognes et al.   PeerJ

Long-term experimentally deepened snow decreases growing-season respiration in a low- and high-arctic tundra ecosystem

(2016) Philipp R. Semenchuk et al.   Journal of Geophysical Research-Biogeosciences

Decadal warming causes a consistent and persistent shift from heterotrophic to autotrophic respiration in contrasting permafrost ecosystems

(2015) Caitlin E. Hicks Pries et al.   GLOBAL CHANGE BIOLOGY

Stability and succession of the rhizosphere microbiota depends upon plant type and soil composition

(2015) Andrzej Tkacz et al.   ISME Journal

Climate change and the permafrost carbon feedback

(2015) E. A. G. Schuur et al.   NATURE

Multi-omics of permafrost, active layer and thermokarst bog soil microbiomes

(2015) Jenni Hultman et al.   NATURE

Ancient low–molecular-weight organic acids in permafrost fuel rapid carbon dioxide production upon thaw

(2015) Travis W. Drake et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Microbial community composition shapes enzyme patterns in topsoil and subsoil horizons along a latitudinal transect in Western Siberia

(2015) Jörg Schnecker et al.   SOIL BIOLOGY & BIOCHEMISTRY

Climate sensitivity of shrub growth across the tundra biome

(2015) Isla H. Myers-Smith et al.   Nature Climate Change

Handling Temperature Bursts Reaching 464°C: Different Microbial Strategies in the Sisters Peak Hydrothermal Chimney

(2014) Mirjam Perner et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Linking soil bacterial biodiversity and soil carbon stability

(2014) Rebecca L Mau et al.   ISME Journal

Impact of fire on active layer and permafrost microbial communities and metagenomes in an upland Alaskan boreal forest

(2014) Neslihan Taş et al.   ISME Journal

Linking soil microbial communities to vascular plant abundance along a climate gradient

(2014) Luca Bragazza et al.   NEW PHYTOLOGIST

The unseen iceberg: plant roots in arctic tundra

(2014) Colleen M. Iversen et al.   NEW PHYTOLOGIST

Short period of oxygenation releases latch on peat decomposition

(2014) Karlijn Brouns et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Input of easily available organic C and N stimulates microbial decomposition of soil organic matter in arctic permafrost soil

(2014) Birgit Wild et al.   SOIL BIOLOGY & BIOCHEMISTRY

Waste Not, Want Not: Why Rarefying Microbiome Data Is Inadmissible

(2014) Paul J. McMurdie et al.   PLoS Computational Biology

Soil carbon mineralisation responses to alterations of microbial diversity and soil structure

(2013) Sabrina Juarez et al.   BIOLOGY AND FERTILITY OF SOILS

Permafrost degradation stimulates carbon loss from experimentally warmed tundra

(2013) Susan M. Natali et al.   ECOLOGY

Rapid responses of permafrost and vegetation to experimentally increased snow cover in sub-arctic Sweden

(2013) Margareta Johansson et al.   Environmental Research Letters

How extreme is an extreme climatic event to a subarctic peatland springtail community?

(2013) Eveline J. Krab et al.   SOIL BIOLOGY & BIOCHEMISTRY

Temperature sensitivity of peatland C and N cycling: Does substrate supply play a role?

(2013) James T. Weedon et al.   SOIL BIOLOGY & BIOCHEMISTRY

Comparative genomics of freshwater Fe-oxidizing bacteria: implications for physiology, ecology, and systematics

(2013) David Emerson et al.   Frontiers in Microbiology

Do Root Exudates Enhance Peat Decomposition?

(2012) Nathan Basiliko et al.   GEOMICROBIOLOGY JOURNAL

High arctic heath soil respiration and biogeochemical dynamics during summer and autumn freeze-in - effects of long-term enhanced water and nutrient supply

(2012) Casper T. Christiansen et al.   GLOBAL CHANGE BIOLOGY

A frozen feast: thawing permafrost increases plant-available nitrogen in subarctic peatlands

(2012) Frida Keuper et al.   GLOBAL CHANGE BIOLOGY

Predicting long-term carbon mineralization and trace gas production from thawing permafrost of Northeast Siberia

(2012) Christian Knoblauch et al.   GLOBAL CHANGE BIOLOGY

Digging deeper to find unique microbial communities: The strong effect of depth on the structure of bacterial and archaeal communities in soil

(2012) Kathryn G. Eilers et al.   SOIL BIOLOGY & BIOCHEMISTRY

mvabund- anRpackage for model-based analysis of multivariate abundance data

(2012) Yi Wang et al.   Methods in Ecology and Evolution

Past and Present Permafrost Temperatures in the Abisko Area: Redrilling of Boreholes

(2011) Margareta Johansson et al.   AMBIO

Generation of Multimillion-Sequence 16S rRNA Gene Libraries from Complex Microbial Communities by Assembling Paired-End Illumina Reads

(2011) Andrea K. Bartram et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons

(2011) B. J. Haas et al.   GENOME RESEARCH

An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea

(2011) Daniel McDonald et al.   ISME Journal

Metagenomic analysis of a permafrost microbial community reveals a rapid response to thaw

(2011) Rachel Mackelprang et al.   NATURE

Microbial activity across a boreal peatland nutrient gradient: the role of fungi and bacteria

(2011) Britney Myers et al.   WETLANDS ECOLOGY AND MANAGEMENT

Distance-based multivariate analyses confound location and dispersion effects

(2011) David I. Warton et al.   Methods in Ecology and Evolution

Phycicoccus cremeus sp. nov., isolated from forest soil, and emended description of the genus Phycicoccus

(2010) J.-Y. Zhang et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

UniFrac: an effective distance metric for microbial community comparison

(2010) Catherine Lozupone et al.   ISME Journal

The functional potential of high Arctic permafrost revealed by metagenomic sequencing, qPCR and microarray analyses

(2010) Etienne Yergeau et al.   ISME Journal

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

(2010) Morgan N. Price et al.   PLoS One

Diversity and ecology of psychrophilic microorganisms

(2010) Rosa Margesin et al.   RESEARCH IN MICROBIOLOGY

Three Genomes from the Phylum Acidobacteria Provide Insight into the Lifestyles of These Microorganisms in Soils

(2009) N. L. Ward et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Testing the functional significance of microbial community composition

(2009) Michael S. Strickland et al.   ECOLOGY

Angustibacter luteus gen. nov., sp. nov., isolated from subarctic forest soil

(2009) T. Tamura et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Caldisericum exile gen. nov., sp. nov., an anaerobic, thermophilic, filamentous bacterium of a novel bacterial phylum, Caldiserica phyl. nov., originally called the candidate phylum OP5, and description of Caldisericaceae fam. nov., Caldisericales ord. nov. and Caldisericia classis nov.

(2009) K. Mori et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Carbon respiration from subsurface peat accelerated by climate warming in the subarctic

(2009) Ellen Dorrepaal et al.   NATURE

Sensitivity of organic matter decomposition to warming varies with its quality

(2008) RICHARD T. CONANT et al.   GLOBAL CHANGE BIOLOGY