Article
Multidisciplinary Sciences
Rika Kudo, Ryota Yamano, Juanwen Yu, Shotaro Koike, Alfabetian Harjuno Condro Haditomo, Mayanne A. M. de Freitas, Jiro Tsuchiya, Sayaka Mino, Fabiano Thompson, Jesus L. Romalde, Hisae Kasai, Yuichi Sakai, Tomoo Sawabe
Summary: Strain PT1(T), a rod-shaped bacterium isolated from laboratory-reared larvae of sea cucumber Apostichopus japonicus, demonstrated similarities to Neptuniibacter marinus ATR 1.1(T) and Neptuniibacter caesariensis MED92(T) with sequence similarities of 98.2% and 98.1%, respectively, based on the analysis of 16S rRNA gene nucleotide sequences. However, the average nucleotide identity (ANI) and in silico DNA-DNA hybridization (DDH) values among these three strains were below 95% and 70%, confirming the novel status of PT1(T). Based on the genomic approach, a new species, Neptuniibacter victor sp. nov., is proposed for PT1(T).
Article
Multidisciplinary Sciences
Lyudmila Romanenko, Nadezhda Otstavnykh, Valeriya Kurilenko, Peter Velansky, Viacheslav Eremeev, Valery Mikhailov, Marina P. Isaeva
Summary: This research report describes the isolation of two novel strains, Profundicola chukchiensis, from the bottom sediments of the Chukchi Sea in the Arctic Ocean, Russia. These strains exhibit unique physiological and genetic characteristics that distinguish them from other known strains, leading to their classification as a novel genus and species.
Article
Multidisciplinary Sciences
Lyudmila Romanenko, Nadezhda Otstavnykh, Valeriya Kurilenko, Peter P. Velansky, Viacheslav Eremeev, Valery Mikhailov, Marina Isaeva
Summary: Two Gram-negative, halophilic strains, KMM 9713 and KMM 9724(T), were isolated from Chukchi Sea sediments in the Arctic Ocean, Russia. These strains belong to a novel genus and species, Profundicola chukchiensis gen. nov., sp. nov., based on phylogenetic and phenotypic characteristics. The strains showed distinct 16S rRNA gene sequence similarity to Ornithobacterium rhinotracheale DSM 15997(T) and Empedobacter genus members.
Article
Multidisciplinary Sciences
Ryota Yamano, Juanwen Yu, Alfabetian Harjuno Condro Haditomo, Chunqi Jiang, Sayaka Mino, Jesus L. Romalde, Kyuhee Kang, Yuichi Sakai, Tomoo Sawabe
Summary: This study isolated a Gram-negative, aerobic bacterium named PTE2(T) from laboratory-reared Japanese sea cucumber larvae. Phylogenetic analysis revealed that PTE2(T) was closely related to Thalassotalea sediminis N211(T), but had some differences, indicating the novelty of this strain. Based on genome-based taxonomic approaches, PTE2(T) is proposed as a new species, Thalassotalea hakodatensis sp. nov.
Article
Multidisciplinary Sciences
Ho Le Han, Dian Alfian Nurcahyanto, Neak Muhammad, Yong-Jae Lee, Tra T. H. Nguyen, Song-Gun Kim, Sook Sin Chan, Kuan Shiong Khoo, Kit Wayne Chew, Pau Loke Show, Thi Ngoc Thu Tran, Thi Dong Phuong Nguyen, Chen Yaw Chiu
Summary: In this study, a novel strain PL0132(T) belonging to the genus Spirosoma in the phylum Bacteroidetes was isolated and identified from a fallen leaf. This Gram-negative, strictly aerobic, rod-shaped strain showed optimal growth at 25 degrees C, pH 6-7, and tolerated 1% NaCl concentration. The complete genome of PL0132(T) consisted of one contig with a sequencing depth of 76x and a G + C content of 46.7%. The strain PL0132(T) is proposed as a new species, Spirosoma foliorum sp. nov.
SCIENTIFIC REPORTS
(2023)
Article
Biodiversity Conservation
Nhan Le Thi Tuyet, Jaisoo Kim
Summary: A Gram-negative strain, RN2-1(T), was isolated from a Korean forest soil sample. It is characterized as aerobic, oxidase-positive, catalase-negative, non-motile, oval/rod-shaped, and can grow in a wide pH and temperature range. The strain belongs to a novel genus, Limobrevibacterium gyesilva gen. nov., sp. nov., and is closely related to Rhodovastum atsumiense G2-11(T). The whole genome analysis and phenotypic data of strain RN2-1(T) support its distinctive phylogenetic position.
Article
Microbiology
Daniel Maddock, Helene Kile, Sandra Denman, Dawn Arnold, Carrie Brady
Summary: This study investigates the bacterial populations in environmental samples and identifies several strains belonging to the order Enterobacterales. Three novel species of the genus Scandinavium were described, and the descriptions of the genus and the type species were emended.
FRONTIERS IN MICROBIOLOGY
(2022)
Article
Multidisciplinary Sciences
Soyoung Yeo, Hyunjoon Park, Heebal Kim, Chang Beom Ryu, Chul Sung Huh
Summary: The human gut microbiota is a complex ecological system. In a culturomics study, a novel bacterium strain ICN-92133(T) was isolated from a patient with Crohn's disease, and its classification and phylogeny were determined. This research is significant for enhancing our understanding of the composition and function of gut microbiota.
SCIENTIFIC REPORTS
(2023)
Article
Multidisciplinary Sciences
Yuanqiang Zou, Xiaoqian Lin, Wenbin Xue, Li Tuo, Ming-Sheng Chen, Xiao-Hui Chen, Cheng-hang Sun, Feina Li, Shao-wei Liu, Ying Dai, Karsten Kristiansen, Liang Xiao
Summary: Two novel anaerobic strains, designated AF52-21(T) and CM04-06(T), were isolated from faeces of healthy Chinese donors using a pure culture strategy. Phylogenetic analysis revealed that these strains clustered with Faecalibacterium species, supporting their recognition as two new species within the genus. Genomic analysis showed differences below the proposed species threshold, confirming their uniqueness.
SCIENTIFIC REPORTS
(2021)
Article
Microbiology
Geeta Chhetri, Inhyup Kim, Jiyoun Kim, Minchung Kang, Taegun Seo
Summary: Strain KVB11(T) isolated from the root of Setaria viridis near Dongguk University is identified as a novel species of the genus Taibaiella, named Taibaiella lutea. Phylogenetic and phylogenomic analysis based on 16S rRNA gene sequences and genomic sequences showed that this strain forms a distinct branch within the genus Taibaiella.
CURRENT MICROBIOLOGY
(2021)
Article
Multidisciplinary Sciences
Luis Johnson Kangale, Didier Raoult, Eric Ghigo, Pierre-Edouard Fournier
Summary: Marseille-P9602(T) is a novel bacterial species isolated from planarian Schmidtea mediterranea, exhibiting distinctive characteristics from closely related species, and named as Chryseobacterium schmidteae sp. nov.
SCIENTIFIC REPORTS
(2021)
Article
Microbiology
Ludovic Besaury, Lucas Martinet, Estelle Muhle, Dominique Clermont, Caroline Remond
Summary: The bacterial strain For3(T) isolated from forest soil in France belongs to a novel species named Streptomyces silvae sp. nov., which exhibits high 16S rRNA gene sequence similarity with known Streptomyces species. Despite genetic relatedness, For3(T) shows distinct genomic features and metabolic pathways compared to its closest relatives, indicating its unique position within the genus Streptomyces.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
(2021)
Article
Microbiology
Huiling Tang, Xiaohui Chen, Mingsheng Chen, Xiaohong Li, Jianjing Jiang, Li Tuo, Feina Li
Summary: A novel endophytic actinobacterial strain, designated MQZ13P-5(T), was isolated and identified as a new species of the genus Phycicoccus, named Phycicoccus sonneraticus sp. nov.
CURRENT MICROBIOLOGY
(2023)
Article
Microbiology
Subhash Yadav, Jin-Soo Kim, Sang-Seob Lee
Summary: Strain H1(T) isolated from crude oil contaminated desert sands has been classified as a novel species Alkanindiges hydrocarboniclasticus, showing distinct morphological, physiological, phylogenetic, and genomic differences from other members of the family Moraxellaceae.
CURRENT MICROBIOLOGY
(2021)
Article
Microbiology
Xianjiao Zhang, Guang-Da Feng, Xiangling Zhen, Yulian Zhang, Xiaoqin Deng, Honghui Zhu, Qing Yao
Summary: Two novel species of the genus Microvirga, Microvirga terricola sp. nov. (type strain c23 x 22(T) = GDMCC 1.1700(T) = KCTC 62432(T)) and Microvirga solisilvae sp. nov. (type strain sex2(T) = GDMCC 1.1651(T) = KACC 21311(T)), were isolated from forest soil in Guangdong Province and Hainan Province, China, respectively. They showed distinct morphological, genetic, and chemotaxonomic characteristics, and phylogenetic analysis supported their placement within the genus Microvirga.
ARCHIVES OF MICROBIOLOGY
(2022)