Comparative Chloroplast Genome Analyses of Species in Gentiana section Cruciata (Gentianaceae) and the Development of Authentication Markers

HomBlocks: A multiple-alignment construction pipeline for organelle phylogenomics based on locally collinear block searching

(2018) Guiqi Bi et al.   GENOMICS

The Complete Plastome Sequences of Seven Species in Gentiana sect. Kudoa (Gentianaceae): Insights Into Plastid Gene Loss and Molecular Evolution

(2018) Shan-Shan Sun et al.   Frontiers in Plant Science

Phylogenomic relationship of feijoa (Acca sellowiana (O.Berg) Burret) with other Myrtaceae based on complete chloroplast genome sequences

(2017) Lilian de Oliveira Machado et al.   GENETICA

Authentication Markers for Five Major Panax Species Developed via Comparative Analysis of Complete Chloroplast Genome Sequences

(2017) Van Binh Nguyen et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

Authentication of Zanthoxylum Species Based on Integrated Analysis of Complete Chloroplast Genome Sequences and Metabolite Profiles

(2017) Hyeon Ju Lee et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

The chloroplast genome sequence from Eugenia uniflora, a Myrtaceae from Neotropics

(2017) Maria Eguiluz et al.   PLANT SYSTEMATICS AND EVOLUTION

Completion of the Chloroplast Genomes of Five Chinese Juglans and Their Contribution to Chloroplast Phylogeny

(2017) Yiheng Hu et al.   Frontiers in Plant Science

Phylogenetic Resolution in Juglans Based on Complete Chloroplast Genomes and Nuclear DNA Sequences

(2017) Wenpan Dong et al.   Frontiers in Plant Science

Phylogenetic studies and comparative chloroplast genome analyses elucidate the basal position of halophyte Nitraria sibirica (Nitrariaceae) in the Sapindales

(2017) Lu Lu et al.   Mitochondrial DNA Part A

The complete chloroplast genome of Gentiana macrophylla

(2017) Xiaofan Wang et al.   Mitochondrial DNA Part B-Resources

Chloroplast Genomic Resource of Paris for Species Discrimination

(2017) Yun Song et al.   Scientific Reports

Chloroplast genome structures in Gentiana (Gentianaceae), based on three medicinal alpine plants used in Tibetan herbal medicine

(2016) Lianghong Ni et al.   CURRENT GENETICS

The complete chloroplast genome of Gentiana straminea (Gentianaceae), an endemic species to the Sino-Himalayan subregion

(2016) Lianghong Ni et al.   GENE

Phylogenomic and structural analyses of 18 complete plastomes across nearly all families of early-diverging eudicots, including an angiosperm-wide analysis of IR gene content evolution

(2016) Yanxia Sun et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

The Complete Chloroplast Genome Sequence of the Medicinal Plant Swertia mussotii Using the PacBio RS II Platform

(2016) Beibei Xiang et al.   MOLECULES

A supermatrix approach provides a comprehensive genus-level phylogeny for Gentianales

(2016) Lei-Lei Yang et al.   Journal of Systematics and Evolution

Comparative Analysis of the Complete Chloroplast Genomes of Five Quercus Species

(2016) Yanci Yang et al.   Frontiers in Plant Science

Comparative Transcriptome and Chloroplast Genome Analyses of Two Related Dipteronia Species

(2016) Tao Zhou et al.   Frontiers in Plant Science

The complete chloroplast genome sequence ofGentiana lawrenceivar. farreri(Gentianaceae) and comparative analysis with its congeneric species

(2016) Peng-Cheng Fu et al.   PeerJ

The Use of DNA Barcoding on Recently Diverged Species in the Genus Gentiana (Gentianaceae) in China

(2016) Juan Liu et al.   PLoS One

Genetic homogenization of the nuclear ITS loci across two morphologically distinct gentians in their overlapping distributions in the Qinghai-Tibet Plateau

(2016) Quanjun Hu et al.   Scientific Reports

Dynamics of chloroplast genomes in green plants

(2015) Jian-Hong Xu et al.   GENOMICS

A Phylogenetic Analysis of 34 Chloroplast Genomes Elucidates the Relationships between Wild and Domestic Species within the GenusCitrus

(2015) Jose Carbonell-Caballero et al.   MOLECULAR BIOLOGY AND EVOLUTION

The chloroplast genome of the hexaploid Spartina maritima (Poaceae, Chloridoideae): Comparative analyses and molecular dating

(2015) M. Rousseau-Gueutin et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Complete Chloroplast Genome of the Multifunctional Crop Globe Artichoke and Comparison with Other Asteraceae

(2015) Pasquale L. Curci et al.   PLoS One

Complete Chloroplast Genome Sequence of Tartary Buckwheat (Fagopyrum tataricum) and Comparative Analysis with Common Buckwheat (F. esculentum)

(2015) Kwang-Soo Cho et al.   PLoS One

ycf1, the most promising plastid DNA barcode of land plants

(2015) Wenpan Dong et al.   Scientific Reports

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Plant DNA barcoding: from gene to genome

(2014) Xiwen Li et al.   BIOLOGICAL REVIEWS

An insight into the genes involved in secoiridoid biosynthesis in Gentiana macrophylla by RNA-seq

(2014) Wenping Hua et al.   MOLECULAR BIOLOGY REPORTS

Highly effective sequencing whole chloroplast genomes of angiosperms by nine novel universal primer pairs

(2014) Jun-Bo Yang et al.   Molecular Ecology Resources

Chloroplast Phylogenomic Analyses Resolve Deep-Level Relationships of an Intractable Bamboo Tribe Arundinarieae (Poaceae)

(2014) Peng-Fei Ma et al.   SYSTEMATIC BIOLOGY

DNA barcoding of medicinal plant material for identification

(2013) Natascha Techen et al.   CURRENT OPINION IN BIOTECHNOLOGY

Reconstruction of the Ancestral Plastid Genome in Geraniaceae Reveals a Correlation between Genome Rearrangements, Repeats, and Nucleotide Substitution Rates

(2013) Mao-Lun Weng et al.   MOLECULAR BIOLOGY AND EVOLUTION

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

Reconstructing mitochondrial genomes directly from genomic next-generation sequencing reads—a baiting and iterative mapping approach

(2013) Christoph Hahn et al.   NUCLEIC ACIDS RESEARCH

OrganellarGenomeDRAW—a suite of tools for generating physical maps of plastid and mitochondrial genomes and visualizing expression data sets

(2013) Marc Lohse et al.   NUCLEIC ACIDS RESEARCH

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

(2012) Anton Bankevich et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

NGS QC Toolkit: A Toolkit for Quality Control of Next Generation Sequencing Data

(2012) Ravi K. Patel et al.   PLoS One

MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

(2012) Fredrik Ronquist et al.   SYSTEMATIC BIOLOGY

Isolation of gentiopicroside from Gentianae Radix and its pharmacokinetics on liver ischemia/reperfusion rats

(2011) Wan-Ling Chang-Liao et al.   JOURNAL OF ETHNOPHARMACOLOGY

High-Throughput Sequencing of Six Bamboo Chloroplast Genomes: Phylogenetic Implications for Temperate Woody Bamboos (Poaceae: Bambusoideae)

(2011) Yun-Jie Zhang et al.   PLoS One

Gentiopicrin-producing endophytic fungus isolated from Gentiana macrophylla

(2009) Hong Yin et al.   PHYTOMEDICINE

A DNA barcode for land plants

(2009) et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA