Complete avian malaria parasite genomes reveal features associated with lineage-specific evolution in birds and mammals

Nutrient sensing modulates malaria parasite virulence

(2017) Liliana Mancio-Silva et al.   NATURE

Plasmodium malariae and P. ovale genomes provide insights into malaria parasite evolution

(2017) Gavin G. Rutledge et al.   NATURE

The Genome ofHaemoproteus tartakovskyiand Its Relationship to Human Malaria Parasites

(2016) Staffan Bensch et al.   Genome Biology and Evolution

Phylogeny of haemosporidian blood parasites revealed by a multi-gene approach

(2016) Janus Borner et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

InterPro in 2017—beyond protein family and domain annotations

(2016) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

A Modern Menagerie of Mammalian Malaria

(2016) Susan L. Perkins et al.   TRENDS IN PARASITOLOGY

Mosquito age and avian malaria infection

(2015) Romain Pigeault et al.   MALARIA JOURNAL

De novo assembly and transcriptome analysis of Plasmodium gallinaceum identifies the Rh5 interacting protein (ripr), and reveals a lack of EBL and RH gene family diversification

(2015) Elvin J Lauron et al.   MALARIA JOURNAL

A New Method for Estimating Species Age Supports the Coexistence of Malaria Parasites and Their Mammalian Hosts

(2015) Joana C. Silva et al.   MOLECULAR BIOLOGY AND EVOLUTION

The Ku heterodimer: Function in DNA repair and beyond

(2015) Victoria L. Fell et al.   MUTATION RESEARCH-REVIEWS IN MUTATION RESEARCH

RIFINs are adhesins implicated in severe Plasmodium falciparum malaria

(2015) Suchi Goel et al.   NATURE MEDICINE

The I-TASSER Suite: protein structure and function prediction

(2015) Jianyi Yang et al.   NATURE METHODS

Hidden costs of infection: Chronic malaria accelerates telomere degradation and senescence in wild birds

(2015) M. Asghar et al.   SCIENCE

A comprehensive evaluation of rodent malaria parasite genomes and gene expression

(2014) Thomas D Otto et al.   BMC BIOLOGY

STEVOR Is a Plasmodium falciparum Erythrocyte Binding Protein that Mediates Merozoite Invasion and Rosetting

(2014) Makhtar Niang et al.   Cell Host & Microbe

Optimized Whole-Genome Amplification Strategy for Extremely AT-Biased Template

(2014) Samuel O. Oyola et al.   DNA RESEARCH

Genomic analysis of the causative agents of coccidiosis in domestic chickens

(2014) Adam J. Reid et al.   GENOME RESEARCH

UpSet: Visualization of Intersecting Sets

(2014) Alexander Lex et al.   IEEE TRANSACTIONS ON VISUALIZATION AND COMPUTER GRAPHICS

Malaria's Many Mates: Past, Present, and Future of the Systematics of the Order Haemosporida

(2014) Susan L Perkins   JOURNAL OF PARASITOLOGY

Transcriptome sequencing and analysis of Plasmodium gallinaceum reveals polymorphisms and selection on the apical membrane antigen-1

(2014) Elvin J Lauron et al.   MALARIA JOURNAL

The InterPro protein families database: the classification resource after 15 years

(2014) Alex Mitchell et al.   NUCLEIC ACIDS RESEARCH

Rfam 12.0: updates to the RNA families database

(2014) Eric P. Nawrocki et al.   NUCLEIC ACIDS RESEARCH

Genome sequencing of chimpanzee malaria parasites reveals possible pathways of adaptation to human hosts

(2014) Thomas D. Otto et al.   Nature Communications

Multiple Lineages of Avian Malaria Parasites (Plasmodium) in the Galapagos Islands and Evidence for Arrival via Migratory Birds

(2013) I. I. LEVIN et al.   CONSERVATION BIOLOGY

Vector transmission regulates immune control of Plasmodium virulence

(2013) Philip J. Spence et al.   NATURE

Pfam: the protein families database

(2013) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

A Method for Selectively Enriching Microbial DNA from Contaminating Vertebrate Host DNA

(2013) George R. Feehery et al.   PLoS One

Role of Plasmepsin V in Export of Diverse Protein Families from thePlasmodium falciparumExportome

(2013) Justin A. Boddey et al.   TRAFFIC

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

(2013) Daehwan Kim et al.   GENOME BIOLOGY

REAPR: a universal tool for genome assembly evaluation

(2013) Martin Hunt et al.   GENOME BIOLOGY

New Ultrastructural Analysis of the Invasive Apparatus of the Plasmodium Ookinete

(2012) Kailash P. Patra et al.   AMERICAN JOURNAL OF TROPICAL MEDICINE AND HYGIENE

Ecology and conservation biology of avian malaria

(2012) Dennis A. LaPointe et al.   Annals of the New York Academy of Sciences

A tale of three next generation sequencing platforms: comparison of Ion torrent, pacific biosciences and illumina MiSeq sequencers

(2012) Michael Quail et al.   BMC GENOMICS

BamView: visualizing and interpretation of next-generation sequencing read alignments

(2012) T. Carver et al.   BRIEFINGS IN BIOINFORMATICS

Efficient Depletion of Host DNA Contamination in Malaria Clinical Sequencing

(2012) Samuel O. Oyola et al.   JOURNAL OF CLINICAL MICROBIOLOGY

The malaria parasite Plasmodium vivax exhibits greater genetic diversity than Plasmodium falciparum

(2012) Daniel E Neafsey et al.   NATURE GENETICS

A post-assembly genome-improvement toolkit (PAGIT) to obtain annotated genomes from contigs

(2012) Martin T Swain et al.   Nature Protocols

High Prevalence and Lineage Diversity of Avian Malaria in Wild Populations of Great Tits (Parus major) and Mosquitoes (Culex pipiens)

(2012) Olivier Glaizot et al.   PLoS One

FIMO: scanning for occurrences of a given motif

(2011) Charles E. Grant et al.   BIOINFORMATICS

Phylogenomic analyses of malaria parasites and evolution of their exported proteins

(2011) Christian Pick et al.   BMC EVOLUTIONARY BIOLOGY

Mitochondrial genes support a common origin of rodent malaria parasites and Plasmodium falciparum's relatives infecting great apes

(2011) Samuel Blanquart et al.   BMC EVOLUTIONARY BIOLOGY

Efficient de novo assembly of large genomes using compressed data structures

(2011) J. T. Simpson et al.   GENOME RESEARCH

Fitness effects of endemic malaria infections in a wild bird population: the importance of ecological structure

(2011) Shelly Lachish et al.   JOURNAL OF ANIMAL ECOLOGY

Bayesian inference of ancient human demography from individual genome sequences

(2011) Ilan Gronau et al.   NATURE GENETICS

RATT: Rapid Annotation Transfer Tool

(2011) Thomas D. Otto et al.   NUCLEIC ACIDS RESEARCH

GeneDB--an annotation database for pathogens

(2011) F. J. Logan-Klumpler et al.   NUCLEIC ACIDS RESEARCH

A Novel ‘Gene Insertion/Marker Out’ (GIMO) Method for Transgene Expression and Gene Complementation in Rodent Malaria Parasites

(2011) Jing-wen Lin et al.   PLoS One

Scaffolding pre-assembled contigs using SSPACE

(2010) Marten Boetzer et al.   BIOINFORMATICS

Fast and accurate long-read alignment with Burrows–Wheeler transform

(2010) Heng Li et al.   BIOINFORMATICS

The pir multigene family of Plasmodium: Antigenic variation and beyond

(2010) Deirdre Cunningham et al.   MOLECULAR AND BIOCHEMICAL PARASITOLOGY

The Gypsy Database (GyDB) of mobile genetic elements: release 2.0

(2010) C. Llorens et al.   NUCLEIC ACIDS RESEARCH

piggyBac is an effective tool for functional analysis of the Plasmodium falciparum genome

(2009) Bharath Balu et al.   BMC MICROBIOLOGY

A Genome-Sequence Survey for Ascogregarina taiwanensis Supports Evolutionary Affiliation but Metabolic Diversity between a Gregarine and Cryptosporidium

(2009) T. J. Templeton et al.   MOLECULAR BIOLOGY AND EVOLUTION

MalAvi: a public database of malaria parasites and related haemosporidians in avian hosts based on mitochondrial cytochromeblineages

(2009) STAFFAN BENSCH et al.   Molecular Ecology Resources

Fine-grained annotation and classification of de novo predicted LTR retrotransposons

(2009) Sascha Steinbiss et al.   NUCLEIC ACIDS RESEARCH

MEME SUITE: tools for motif discovery and searching

(2009) T. L. Bailey et al.   NUCLEIC ACIDS RESEARCH

Artemis and ACT: viewing, annotating and comparing sequences stored in a relational database

(2008) Tim Carver et al.   BIOINFORMATICS

LTRharvest, an efficient and flexible software for de novo detection of LTR retrotransposons

(2008) David Ellinghaus et al.   BMC BIOINFORMATICS

The genome of the simian and human malaria parasite Plasmodium knowlesi

(2008) A. Pain et al.   NATURE

Plasmodium vivax and the importance of the subtelomeric multigene vir superfamily

(2008) Carmen Fernandez-Becerra et al.   TRENDS IN PARASITOLOGY