Direct comparison of culture-dependent and culture-independent molecular approaches reveal the diversity of fungal endophytic communities in stems of grapevine (Vitis vinifera)
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Title
Direct comparison of culture-dependent and culture-independent molecular approaches reveal the diversity of fungal endophytic communities in stems of grapevine (Vitis vinifera)
Authors
Keywords
Molecular data, Morphological characteristics, Multi-gene phylogeny, Mycobiome, Next generation sequencing
Journal
FUNGAL DIVERSITY
Volume 90, Issue 1, Pages 85-107
Publisher
Springer Nature
Online
2018-04-13
DOI
10.1007/s13225-018-0399-3
References
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Note: Only part of the references are listed.- Biodiversity of fungi on Vitis vinifera L. revealed by traditional and high-resolution culture-independent approaches
- (2018) Ruvishika S. Jayawardena et al. FUNGAL DIVERSITY
- Comparison of methods for identification of microbial communities in book collections: Culture-dependent (sequencing and MALDI-TOF MS) and culture-independent (Illumina MiSeq)
- (2018) Lucia Kraková et al. INTERNATIONAL BIODETERIORATION & BIODEGRADATION
- Yeast diversity during the fermentation of Andean chicha : A comparison of high-throughput sequencing and culture-dependent approaches
- (2017) Lucía M. Mendoza et al. FOOD MICROBIOLOGY
- Dismantling Marchandiomphalina into Agonimia (Verrucariaceae) and Lawreymyces gen. nov. (Corticiaceae): setting a precedent to the formal recognition of thousands of voucherless fungi based on type sequences
- (2017) Robert Lücking et al. FUNGAL DIVERSITY
- Plant age and seasonal timing determine endophyte growth and alkaloid biosynthesis
- (2017) Benjamin Fuchs et al. Fungal Ecology
- Molecular evidence strongly supports deadwood-inhabiting fungi exhibiting unexpected tree species preferences in temperate forests
- (2017) Witoon Purahong et al. ISME Journal
- Application of High-Throughput Internal Transcribed Spacer rRNA Metagenomics Analysis in Deciphering Endophytic Fungi Diversity of Dendrobium Officinale
- (2017) Wenhong Liu et al. Journal of Biobased Materials and Bioenergy
- Host Specificity of Endophytic Mycobiota of Wild Nicotiana Plants from Arid Regions of Northern Australia
- (2017) Khondoker M. G. Dastogeer et al. MICROBIAL ECOLOGY
- Disentangling environmental and host sources of fungal endophyte communities in an experimental beachgrass study
- (2017) Aaron S. David et al. MOLECULAR ECOLOGY
- Genetic monitoring of open ocean biodiversity: An evaluation of DNA metabarcoding for processing continuous plankton recorder samples
- (2017) Bruce E. Deagle et al. Molecular Ecology Resources
- Effects of Growth Media on the Diversity of Culturable Fungi from Lichens
- (2017) Lucia Muggia et al. MOLECULES
- Endophytic fungi associated with roots of date palm ( Phoenix dactylifera ) in coastal dunes
- (2017) Fadila Mohamed Mahmoud et al. REVISTA IBEROAMERICANA DE MICOLOGIA
- Comparison of Standard Culture-Based Method to Culture-Independent Method for Evaluation of Hygiene Effects on the Hand Microbiome
- (2017) C. Zapka et al. mBio
- DNA metabarcoding for high-throughput monitoring of estuarine macrobenthic communities
- (2017) Jorge Lobo et al. Scientific Reports
- Characterization of Unexplored Deadwood Mycobiome in Highly Diverse Subtropical Forests Using Culture-independent Molecular Technique
- (2017) Witoon Purahong et al. Frontiers in Microbiology
- The Grapevine and Wine Microbiome: Insights from High-Throughput Amplicon Sequencing
- (2017) Horatio H. Morgan et al. Frontiers in Microbiology
- A Phloem-Feeding Insect Transfers Bacterial Endophytic Communities between Grapevine Plants
- (2017) Sebastiàn Lòpez-Fernàndez et al. Frontiers in Microbiology
- Accurate Estimation of Fungal Diversity and Abundance through Improved Lineage-Specific Primers Optimized for Illumina Amplicon Sequencing
- (2016) D. Lee Taylor et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Identification of antibacterial peptides from endophytic microbiome
- (2016) M. V. Tejesvi et al. APPLIED MICROBIOLOGY AND BIOTECHNOLOGY
- Various fungal communities colonise the functional wood tissues of old grapevines externally free from grapevine trunk disease symptoms
- (2016) E. Bruez et al. AUSTRALIAN JOURNAL OF GRAPE AND WINE RESEARCH
- Exploring potential bacterial and fungal biocontrol agents transmitted from seeds to sprouts of wheat
- (2016) Yali Huang et al. BIOLOGICAL CONTROL
- Diversity of fungal endophytes in non-native Phragmites australis in the Great Lakes
- (2016) Keith Clay et al. BIOLOGICAL INVASIONS
- Spatial and seasonal influences on culturable endophytic mycobiota associated with different tissues of Eugenia jambolana Lam. and their antibacterial activity against MDR strains
- (2016) Manila Yadav et al. BMC MICROBIOLOGY
- Dissecting endophytic lifestyle along the parasitism/mutualism continuum in Arabidopsis
- (2016) Philipp H Fesel et al. CURRENT OPINION IN MICROBIOLOGY
- Fungal endophytic communities associated to the phyllosphere of grapevine cultivars under different types of management
- (2016) Carla Marisa Reis Varanda et al. Fungal Biology
- Fungal diversity notes 367–490: taxonomic and phylogenetic contributions to fungal taxa
- (2016) Kevin D. Hyde et al. FUNGAL DIVERSITY
- New evidence for broad trophic status of leaf endophytic fungi of Quercus gambelii
- (2016) Ismaiel Szink et al. Fungal Ecology
- Dark septate endophytic fungi of native plants along an altitudinal gradient in the Brazilian Atlantic forest
- (2016) Joice Andrade Bonfim et al. Fungal Ecology
- FUNGuild: An open annotation tool for parsing fungal community datasets by ecological guild
- (2016) Nhu H. Nguyen et al. Fungal Ecology
- Kribbella pittospori sp. nov., an endophytic actinobacterium isolated from the surface-sterilized stem of an Australian native apricot tree, Pittosporum angustifolium
- (2016) Onuma Kaewkla et al. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
- Plant Host and Geographic Location Drive Endophyte Community Composition in the Face of Perturbation
- (2016) Natalie Christian et al. MICROBIAL ECOLOGY
- Diversity of bacterial endophytes in 3 and 15 year-old grapevines of Vitis vinifera cv. Corvina and their potential for plant growth promotion and phytopathogen control
- (2016) Marco Andreolli et al. MICROBIOLOGICAL RESEARCH
- Life in leaf litter: novel insights into community dynamics of bacteria and fungi during litter decomposition
- (2016) Witoon Purahong et al. MOLECULAR ECOLOGY
- Cadophora species associated with wood-decay of grapevine in North America
- (2015) Renaud Travadon et al. Fungal Biology
- Linking molecular deadwood-inhabiting fungal diversity and community dynamics to ecosystem functions and processes in Central European forests
- (2015) Björn Hoppe et al. FUNGAL DIVERSITY
- Fungal diversity notes 111–252—taxonomic and phylogenetic contributions to fungal taxa
- (2015) Hiran A. Ariyawansa et al. FUNGAL DIVERSITY
- Plant-associated fungal communities in the light of meta’omics
- (2015) Derek Peršoh FUNGAL DIVERSITY
- Fungal diversity notes 1–110: taxonomic and phylogenetic contributions to fungal species
- (2015) Jian Kui Liu et al. FUNGAL DIVERSITY
- Biodiversity of endophytic fungi in different leaf ages of Calotropis procera and their antimicrobial activity
- (2015) T.L. Nascimento et al. Fungal Ecology
- Using direct amplification and next-generation sequencing technology to explore foliar endophyte communities in experimentally inoculated western white pines
- (2015) Lorinda S. Bullington et al. Fungal Ecology
- A Comprehensive, Automatically Updated Fungal ITS Sequence Dataset for Reference-Based Chimera Control in Environmental Sequencing Efforts
- (2015) R. Henrik Nilsson et al. MICROBES AND ENVIRONMENTS
- The Hidden World within Plants: Ecological and Evolutionary Considerations for Defining Functioning of Microbial Endophytes
- (2015) Pablo R. Hardoim et al. MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS
- Interaction type influences ecological network structure more than local abiotic conditions: evidence from endophytic and endolichenic fungi at a continental scale
- (2015) Pierre-Luc Chagnon et al. OECOLOGIA
- Endophyte community composition is associated with dieback occurrence in an invasive tree
- (2015) Tracey V. Steinrucken et al. PLANT AND SOIL
- Fungal endophytes: modifiers of plant disease
- (2015) Posy E. Busby et al. PLANT MOLECULAR BIOLOGY
- Sequence-based Analysis of the Vitis vinifera L. cv Cabernet Sauvignon Grape Must Mycobiome in Three South African Vineyards Employing Distinct Agronomic Systems
- (2015) Mathabatha E. Setati et al. Frontiers in Microbiology
- Diversity of Endophytic Fungi Associated with the Foliar Tissue of a Hemi-Parasitic Plant Macrosolen cochinchinensis
- (2014) Sheng-Liang Zhou et al. CURRENT MICROBIOLOGY
- One stop shop: backbones trees for important phytopathogenic genera: I (2014)
- (2014) Kevin D. Hyde et al. FUNGAL DIVERSITY
- Symptomless Endophytic Fungi Suppress Endogenous Levels of Salicylic Acid and Interact With the Jasmonate-Dependent Indirect Defense Traits of Their Host, Lima Bean (Phaseolus lunatus)
- (2014) Ariana L. Navarro-Meléndez et al. JOURNAL OF CHEMICAL ECOLOGY
- Unravelling the Diversity of Grapevine Microbiome
- (2014) Cátia Pinto et al. PLoS One
- Towards a unified paradigm for sequence-based identification of fungi
- (2013) Urmas Kõljalg et al. MOLECULAR ECOLOGY
- UPARSE: highly accurate OTU sequences from microbial amplicon reads
- (2013) Robert C Edgar NATURE METHODS
- Intraspecific ITS Variability in the Kingdom Fungi as Expressed in the International Sequence Databases and Its Implications for Molecular Species Identification
- (2012) R. Henrik Nilsson et al. Evolutionary Bioinformatics
- The endophytic mycobiota of Arabidopsis thaliana
- (2012) Elena García et al. FUNGAL DIVERSITY
- Endophytic fungi from Vitis labrusca L. ‘Niagara Rosada’) and its potential for the biological control of Fusarium oxysporum
- (2012) M.C.P. Brum et al. GENETICS AND MOLECULAR RESEARCH
- Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing
- (2012) Nicholas A Bokulich et al. NATURE METHODS
- Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi
- (2012) C. L. Schoch et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Age-dependent Distribution of Fungal Endophytes in Panax ginseng Roots Cultivated in Korea
- (2012) Young-Hwan Park et al. Journal of Ginseng Research
- Five simple guidelines for establishing basic authenticity and reliability of newly generated fungal ITS sequences
- (2012) R. Henrik Nilsson et al. MycoKeys
- Functional and Structural Microbial Diversity in Organic and Conventional Viticulture: Organic Farming Benefits Natural Biocontrol Agents
- (2011) Florian Schmid et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Restructuring of Endophytic Bacterial Communities in Grapevine Yellows-Diseased and Recovered Vitis vinifera L. Plants
- (2011) Daniela Bulgari et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- UCHIME improves sensitivity and speed of chimera detection
- (2011) Robert C. Edgar et al. BIOINFORMATICS
- FLASH: fast length adjustment of short reads to improve genome assemblies
- (2011) T. Magoc et al. BIOINFORMATICS
- From morphology to molecular biology: can we use sequence data to identify fungal endophytes?
- (2011) Thida Win Ko Ko et al. FUNGAL DIVERSITY
- Bioactivity and genetic diversity of endophytic fungi in Rhododendron tomentosum Harmaja
- (2011) Mysore V. Tejesvi et al. FUNGAL DIVERSITY
- Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons
- (2011) B. J. Haas et al. GENOME RESEARCH
- Endophytes of Grapevine Flowers, Berries, and Seeds: Identification of Cultivable Bacteria, Comparison with Other Plant Parts, and Visualization of Niches of Colonization
- (2011) Stéphane Compant et al. MICROBIAL ECOLOGY
- Can leaf degrading enzymes provide evidence that endophytic fungi becoming saprobes?
- (2010) Itthayakorn Promputtha et al. FUNGAL DIVERSITY
- Root endophytes along a primary succession gradient in northern Finland
- (2010) M. V. Tejesvi et al. FUNGAL DIVERSITY
- Foliar endophytic fungi from Hevea brasiliensis and their antagonism on Microcyclus ulei
- (2010) Anderson C. S. Rocha et al. FUNGAL DIVERSITY
- The endophytic mycota associated with Vitis vinifera in central Spain
- (2010) Vicente González et al. FUNGAL DIVERSITY
- Biodiversity of fungal endophyte communities inhabiting switchgrass (Panicum virgatum L.) growing in the native tallgrass prairie of northern Oklahoma
- (2010) Sita R. Ghimire et al. FUNGAL DIVERSITY
- Endophytic mycobiota of leaves and roots of the grass Holcus lanatus
- (2010) S. Sánchez Márquez et al. FUNGAL DIVERSITY
- Effects of fungal endophytes on grass and non-grass litter decomposition rates
- (2010) Witoon Purahong et al. FUNGAL DIVERSITY
- Identifying wood-inhabiting fungi with 454 sequencing – what is the probability that BLAST gives the correct species?
- (2010) Otso Ovaskainen et al. Fungal Ecology
- Multilocus species identification and fungal DNA barcoding: insights from blue stain fungal symbionts of the mountain pine beetle
- (2010) AMANDA D. ROE et al. Molecular Ecology Resources
- QIIME allows analysis of high-throughput community sequencing data
- (2010) J Gregory Caporaso et al. NATURE METHODS
- What is the value of ITS sequence data in Colletotrichum systematics and species diagnosis? A case study using the falcate-spored graminicolous Colletotrichum group
- (2009) Jo Anne Crouch et al. MYCOLOGIA
- DNA-Dependent Detection of the Grapevine Fungal EndophytesAureobasidium pullulansandEpicoccum nigrum
- (2009) M. Martini et al. PLANT DISEASE
- Recent developments in the MAFFT multiple sequence alignment program
- (2008) K. Katoh et al. BRIEFINGS IN BIOINFORMATICS
- Translocation of nitrogen and carbon integrates biotic crust and grass production in desert grassland
- (2008) Laura E. Green et al. JOURNAL OF ECOLOGY
- Strains ofAureobasidium pullulansCan Lower Ochratoxin A Contamination in Wine Grapes
- (2008) D. V. de Felice et al. PHYTOPATHOLOGY
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