Identification of cancer-related potential biomarkers based on lncRNA-pseudogene-mRNA competitive networks

LncRNA OIP5-AS1 loss-induced microRNA-410 accumulation regulates cell proliferation and apoptosis by targeting KLF10 via activating PTEN/PI3K/AKT pathway in multiple myeloma

(2017) Nan Yang et al.   Cell Death & Disease

Targeting MDM4 Splicing in Cancers

(2017) Boris Bardot et al.   Genes

TANRIC: An Interactive Open Platform to Explore the Function of lncRNAs in Cancer

(2015) Jun Li et al.   CANCER RESEARCH

Updated Field Synopsis and Systematic Meta-Analyses of Genetic Association Studies in Cutaneous Melanoma: The MelGene Database

(2015) Kyriaki Antonopoulou et al.   JOURNAL OF INVESTIGATIVE DERMATOLOGY

The mRNA related ceRNA–ceRNA landscape and significance across 20 major cancer types

(2015) Juan Xu et al.   NUCLEIC ACIDS RESEARCH

DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts

(2015) Maria D. Paraskevopoulou et al.   NUCLEIC ACIDS RESEARCH

Identification of lncRNA-associated competing triplets reveals global patterns and prognostic markers for cancer

(2015) Peng Wang et al.   NUCLEIC ACIDS RESEARCH

OncomiRDB: a database for the experimentally verified oncogenic and tumor-suppressive microRNAs

(2014) Dongfang Wang et al.   BIOINFORMATICS

Computational analysis identifies a sponge interaction network between long non-coding RNAs and messenger RNAs in human breast cancer

(2014) Paola Paci et al.   BMC Systems Biology

Intrinsic Subtypes from PAM50 Gene Expression Assay in a Population-Based Breast Cancer Cohort: Differences by Age, Race, and Tumor Characteristics

(2014) C. Sweeney et al.   CANCER EPIDEMIOLOGY BIOMARKERS & PREVENTION

Replication of Associations between GWAS SNPs and Melanoma Risk in the Population Architecture Using Genomics and Epidemiology (PAGE) Study

(2014) Jonathan M. Kocarnik et al.   JOURNAL OF INVESTIGATIVE DERMATOLOGY

Pseudogene PTENP1 Functions as a Competing Endogenous RNA to Suppress Clear-Cell Renal Cell Carcinoma Progression

(2014) G. Yu et al.   MOLECULAR CANCER THERAPEUTICS

The multilayered complexity of ceRNA crosstalk and competition

(2014) Yvonne Tay et al.   NATURE

The UCSC Cancer Genomics Browser: update 2015

(2014) Mary Goldman et al.   NUCLEIC ACIDS RESEARCH

P53-regulated long non-coding RNA TUG1 affects cell proliferation in human non-small cell lung cancer, partly through epigenetically regulating HOXB7 expression

(2014) E-b Zhang et al.   Cell Death & Disease

Long noncoding RNA associated-competing endogenous RNAs in gastric cancer

(2014) Tian Xia et al.   Scientific Reports

miR-124 inhibits the growth of glioblastoma through the downregulation of SOS1

(2013) ZHONGHUA LV et al.   Molecular Medicine Reports

Enabling transparent and collaborative computational analysis of 12 tumor types within The Cancer Genome Atlas

(2013) Larsson Omberg et al.   NATURE GENETICS

The Cancer Genome Atlas Pan-Cancer analysis project

(2013) John N Weinstein et al.   NATURE GENETICS

starBase v2.0: decoding miRNA-ceRNA, miRNA-ncRNA and protein–RNA interaction networks from large-scale CLIP-Seq data

(2013) Jun-Hao Li et al.   NUCLEIC ACIDS RESEARCH

HMDD v2.0: a database for experimentally supported human microRNA and disease associations

(2013) Yang Li et al.   NUCLEIC ACIDS RESEARCH

The GENCODE v7 catalog of human long noncoding RNAs: Analysis of their gene structure, evolution, and expression

(2012) T. Derrien et al.   GENOME RESEARCH

Functional consequences of PRPF39 on distant genes and cisplatin sensitivity

(2012) A. L. Stark et al.   HUMAN MOLECULAR GENETICS

Long intergenic non-coding RNA TUG1 is overexpressed in urothelial carcinoma of the bladder

(2012) Yonghua Han et al.   JOURNAL OF SURGICAL ONCOLOGY

LncRNADisease: a database for long-non-coding RNA-associated diseases

(2012) Geng Chen et al.   NUCLEIC ACIDS RESEARCH

miREnvironment Database: providing a bridge for microRNAs, environmental factors and phenotypes

(2011) Qingqing Yang et al.   BIOINFORMATICS

Coding-Independent Regulation of the Tumor Suppressor PTEN by Competing Endogenous mRNAs

(2011) Yvonne Tay et al.   CELL

A ceRNA Hypothesis: The Rosetta Stone of a Hidden RNA Language?

(2011) Leonardo Salmena et al.   CELL

Emerging Roles for Natural MicroRNA Sponges

(2010) Margaret S. Ebert et al.   CURRENT BIOLOGY

A coding-independent function of gene and pseudogene mRNAs regulates tumour biology

(2010) Laura Poliseno et al.   NATURE

miRBase: integrating microRNA annotation and deep-sequencing data

(2010) A. Kozomara et al.   NUCLEIC ACIDS RESEARCH

CREB up-regulates long non-coding RNA, HULC expression through interaction with microRNA-372 in liver cancer

(2010) Jiayi Wang et al.   NUCLEIC ACIDS RESEARCH

Redefining MicroRNA Targets

(2009) Hervé Seitz   CURRENT BIOLOGY

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

(2009) Da Wei Huang et al.   Nature Protocols

Mapping and quantifying mammalian transcriptomes by RNA-Seq

(2008) Ali Mortazavi et al.   NATURE METHODS

miR2Disease: a manually curated database for microRNA deregulation in human disease

(2008) Q. Jiang et al.   NUCLEIC ACIDS RESEARCH