Integrative omics - from data to biology

Integrative omics for health and disease

(2018) Konrad J. Karczewski et al.   NATURE REVIEWS GENETICS

qPortal: A platform for data-driven biomedical research

(2018) Christopher Mohr et al.   PLoS One

BioInfra.Prot: A comprehensive proteomics workflow including data standardization, protein inference, expression analysis and data publication

(2017) Michael Turewicz et al.   JOURNAL OF BIOTECHNOLOGY

Network propagation: a universal amplifier of genetic associations

(2017) Lenore Cowen et al.   NATURE REVIEWS GENETICS

The target landscape of clinical kinase drugs

(2017) Susan Klaeger et al.   SCIENCE

Synaptic Interactome Mining Reveals p140Cap as a New Hub for PSD Proteins Involved in Psychiatric and Neurological Disorders

(2017) Annalisa Alfieri et al.   Frontiers in Molecular Neuroscience

Integrative analysis for identifying joint modular patterns of gene-expression and drug-response data

(2016) Jinyu Chen et al.   BIOINFORMATICS

OpenMS: a flexible open-source software platform for mass spectrometry data analysis

(2016) Hannes L Röst et al.   NATURE METHODS

Multiomic Analysis of the UV-Induced DNA Damage Response

(2016) Stefan Boeing et al.   Cell Reports

Integrative Multi-omics Module Network Inference with Lemon-Tree

(2015) Eric Bonnet et al.   PLoS Computational Biology

Bayesian joint analysis of heterogeneous genomics data

(2014) Priyadip Ray et al.   BIOINFORMATICS

A multivariate approach to the integration of multi-omics datasets

(2014) Chen Meng et al.   BMC BIOINFORMATICS

Similarity network fusion for aggregating data types on a genomic scale

(2014) Bo Wang et al.   NATURE METHODS

Joint and individual variation explained (JIVE) for integrated analysis of multiple data types

(2013) Eric F. Lock et al.   Annals of Applied Statistics

A pathway-based data integration framework for prediction of disease progression

(2013) José A. Seoane et al.   BIOINFORMATICS

Bayesian consensus clustering

(2013) Eric F. Lock et al.   BIOINFORMATICS

Confero: an integrated contrast data and gene set platform for computational analysis and biological interpretation of omics data

(2013) Leandro Hermida et al.   BMC GENOMICS

Mass spectrometry imaging: linking molecule profiles to tissue spatial distribution

(2013) Hassan Dihazi et al.   Expert Review of Proteomics

NetGestalt: integrating multidimensional omics data over biological networks

(2013) Zhiao Shi et al.   NATURE METHODS

High-resolution network biology: connecting sequence with function

(2013) Colm J. Ryan et al.   NATURE REVIEWS GENETICS

A modular framework for gene set analysis integrating multilevel omics data

(2013) Steffen Sass et al.   NUCLEIC ACIDS RESEARCH

ATHENA: Identifying interactions between different levels of genomic data associated with cancer clinical outcomes using grammatical evolution neural network

(2013) Dokyoon Kim et al.   BioData Mining

Bayesian correlated clustering to integrate multiple datasets

(2012) Paul Kirk et al.   BIOINFORMATICS

iBAG: integrative Bayesian analysis of high-dimensional multiplatform genomics data

(2012) Wenting Wang et al.   BIOINFORMATICS

InCroMAP: integrated analysis of cross-platform microarray and pathway data

(2012) C. Wrzodek et al.   BIOINFORMATICS

Identifying multi-layer gene regulatory modules from multi-dimensional genomic data

(2012) W. Li et al.   BIOINFORMATICS

A novel computational framework for simultaneous integration of multiple types of genomic data to identify microRNA-gene regulatory modules

(2011) Shihua Zhang et al.   BIOINFORMATICS

Inference of patient-specific pathway activities from multi-dimensional cancer genomics data using PARADIGM

(2010) Charles J. Vaske et al.   BIOINFORMATICS

Large-scale data integration framework provides a comprehensive view on glioblastoma multiforme

(2010) Kristian Ovaska et al.   Genome Medicine

Integrative clustering of multiple genomic data types using a joint latent variable model with application to breast and lung cancer subtype analysis

(2009) Ronglai Shen et al.   BIOINFORMATICS

integrOmics: an R package to unravel relationships between two omics datasets

(2009) Kim-Anh Lê Cao et al.   BIOINFORMATICS

DAnTE: a statistical tool for quantitative analysis of -omics data

(2008) A. D. Polpitiya et al.   BIOINFORMATICS