Identifying multi-layer gene regulatory modules from multi-dimensional genomic data

Weighted kernel Fisher discriminant analysis for integrating heterogeneous data

(2011) Jemila S. Hamid et al.   COMPUTATIONAL STATISTICS & DATA ANALYSIS

Time to Recurrence and Survival in Serous Ovarian Tumors Predicted from Integrated Genomic Profiles

(2011) Parminder K. Mankoo et al.   PLoS One

Construction and Analysis of an Integrated Regulatory Network Derived from High-Throughput Sequencing Data

(2011) Chao Cheng et al.   PLoS Computational Biology

L2-norm multiple kernel learning and its application to biomedical data fusion

(2010) Shi Yu et al.   BMC BIOINFORMATICS

BRCA1 Represses Amphiregulin Gene Expression

(2010) E. P. Lamber et al.   CANCER RESEARCH

Sparse partial least squares regression for simultaneous dimension reduction and variable selection

(2010) Hyonho Chun et al.   JOURNAL OF THE ROYAL STATISTICAL SOCIETY SERIES B-STATISTICAL METHODOLOGY

Small molecules with big effects: The role of the microRNAome in cancer and carcinogenesis

(2010) Igor Koturbash et al.   MUTATION RESEARCH-GENETIC TOXICOLOGY AND ENVIRONMENTAL MUTAGENESIS

A Bayesian Partition Method for Detecting Pleiotropic and Epistatic eQTL Modules

(2010) Wei Zhang et al.   PLoS Computational Biology

Multi-species integrative biclustering

(2010) Peter Waltman et al.   GENOME BIOLOGY

Clustered microRNAs' coordination in regulating protein-protein interaction network

(2009) Xiongying Yuan et al.   BMC Systems Biology

Expression and function of HOXA genes in normal and neoplastic ovarian epithelial cells

(2009) Takayo Ota et al.   DIFFERENTIATION

HOXA methylation in normal endometrium from premenopausal women is associated with the presence of ovarian cancer: A proof of principle study

(2009) Martin Widschwendter et al.   INTERNATIONAL JOURNAL OF CANCER

Inferring differentiation pathways from gene expression

(2008) Ivan G. Costa et al.   BIOINFORMATICS

MicroRNA Expression Profiling in Human Ovarian Cancer: miR-214 Induces Cell Survival and Cisplatin Resistance by Targeting PTEN

(2008) H. Yang et al.   CANCER RESEARCH

MicroRNA Expression Profiles in Serous Ovarian Carcinoma

(2008) E. J. Nam et al.   CLINICAL CANCER RESEARCH

Loss of trimethylation at lysine 27 of histone H3 is a predictor of poor outcome in breast, ovarian, and pancreatic cancers

(2008) Yongkun Wei et al.   MOLECULAR CARCINOGENESIS

Comprehensive genomic characterization defines human glioblastoma genes and core pathways

(2008) Roger McLendon et al.   NATURE

A modular approach for integrative analysis of large-scale gene-expression and drug-response data

(2008) Zoltán Kutalik et al.   NATURE BIOTECHNOLOGY

Sparse principal component analysis via regularized low rank matrix approximation

(2007) Haipeng Shen et al.   JOURNAL OF MULTIVARIATE ANALYSIS