Local adaptation and ecological differentiation under selection, migration, and drift in Arabidopsis lyrata *

Genome-Wide Analysis of Colonization History and Concomitant Selection in Arabidopsis lyrata

(2017) Tiina M. Mattila et al.   MOLECULAR BIOLOGY AND EVOLUTION

Local Populations of Arabidopsis thaliana Show Clear Relationship between Photoperiodic Sensitivity of Flowering Time and Altitude

(2017) Anna M. Lewandowska-Sabat et al.   Frontiers in Plant Science

Adaptive divergence in flowering time among natural populations ofArabidopsis thaliana: Estimates of selection and QTL mapping

(2016) Jon Ågren et al.   EVOLUTION

Similarity in G matrix structure among natural populations ofArabidopsis lyrata

(2016) Adriana Puentes et al.   EVOLUTION

Local Adaptation by Alleles of Small Effect

(2015) Sam Yeaman   AMERICAN NATURALIST

Timing of shoot development transitions affects degree of perenniality in Arabidopsis lyrata (Brassicaceae)

(2015) David L. Remington et al.   BMC PLANT BIOLOGY

Selection on a Genetic Polymorphism Counteracts Ecological Speciation in a Stick Insect

(2015) Aaron A. Comeault et al.   CURRENT BIOLOGY

A genomic selection component analysis characterizes migration-selection balance

(2015) Patrick J. Monnahan et al.   EVOLUTION

Fitting Linear Mixed-Effects Models Usinglme4

(2015) Douglas Bates et al.   Journal of Statistical Software

MCMC Methods for Multi-Response Generalized Linear Mixed Models: TheMCMCglmmRPackage

(2015) Jarrod D. Hadfield   Journal of Statistical Software

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

ANGSD: Analysis of Next Generation Sequencing Data

(2014) Thorfinn Sand Korneliussen et al.   BMC BIOINFORMATICS

Large-scale adaptive differentiation in the alpine perennial herbArabis alpina

(2014) Per Toräng et al.   NEW PHYTOLOGIST

Microgeographic adaptation and the spatial scale of evolution

(2014) Jonathan L. Richardson et al.   TRENDS IN ECOLOGY & EVOLUTION

Genetic changes in flowering and morphology in response to adaptation to a high-latitude environment in Arabidopsis lyrata

(2013) Bénédicte Quilot-Turion et al.   ANNALS OF BOTANY

Plant population differentiation and climate change: responses of grassland species along an elevational gradient

(2013) Esther R. Frei et al.   GLOBAL CHANGE BIOLOGY

Potential for evolutionary responses to climate change - evidence from tree populations

(2013) Florian J. Alberto et al.   GLOBAL CHANGE BIOLOGY

Local adaptation and plasticity ofErysimum capitatumto altitude: its implications for responses to climate change

(2013) Eunsuk Kim et al.   JOURNAL OF ECOLOGY

Characterizing Bias in Population Genetic Inferences from Low-Coverage Sequencing Data

(2013) Eunjung Han et al.   MOLECULAR BIOLOGY AND EVOLUTION

Ecological genomics of local adaptation

(2013) Outi Savolainen et al.   NATURE REVIEWS GENETICS

Robust Demographic Inference from Genomic and SNP Data

(2013) Laurent Excoffier et al.   PLoS Genetics

Time scales of divergence and speciation among natural populations and subspecies of Arabidopsis lyrata (Brassicaceae)

(2012) Tanja Pyhäjärvi et al.   AMERICAN JOURNAL OF BOTANY

The effects of migration and drift on local adaptation to a heterogeneous environment

(2012) F. BLANQUART et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Genetic basis of local adaptation and flowering time variation inArabidopsis lyrata

(2012) PÄIVI H. LEINONEN et al.   MOLECULAR ECOLOGY

Genetic trade-offs and conditional neutrality contribute to local adaptation

(2012) JILL T. ANDERSON et al.   MOLECULAR ECOLOGY

Adaptation at range margins: common garden trials and the performance ofArabidopsis lyrataacross its northwestern European range

(2012) Philippine Vergeer et al.   NEW PHYTOLOGIST

Reciprocal transplants demonstrate strong adaptive differentiation of the model organism Arabidopsis thaliana in its native range

(2012) Jon Ågren et al.   NEW PHYTOLOGIST

Interactions between Soil Habitat and Geographic Range Location Affect Plant Fitness

(2012) John Stanton-Geddes et al.   PLoS One

Phenotypic plasticity and adaptive evolution contribute to advancing flowering phenology in response to climate change

(2012) J. T. Anderson et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Meta-analysis of phenotypic selection on flowering phenology suggests that early flowering plants are favoured

(2011) Miguel A. Munguía-Rosas et al.   ECOLOGY LETTERS

ESTABLISHMENT AND MAINTENANCE OF ADAPTIVE GENETIC DIVERGENCE UNDER MIGRATION, SELECTION, AND DRIFT

(2011) Sam Yeaman et al.   EVOLUTION

Climate change and evolutionary adaptation

(2011) Ary A. Hoffmann et al.   NATURE

The Arabidopsis lyrata genome sequence and the basis of rapid genome size change

(2011) Tina T Hu et al.   NATURE GENETICS

A framework for variation discovery and genotyping using next-generation DNA sequencing data

(2011) Mark A DePristo et al.   NATURE GENETICS

Genotype and SNP calling from next-generation sequencing data

(2011) Rasmus Nielsen et al.   NATURE REVIEWS GENETICS

A Map of Local Adaptation in Arabidopsis thaliana

(2011) A. Fournier-Level et al.   SCIENCE

LIFE-HISTORY QTLS AND NATURAL SELECTION ON FLOWERING TIME IN BOECHERA STRICTA, A PERENNIAL RELATIVE OF ARABIDOPSIS

(2010) JILL T. ANDERSON et al.   EVOLUTION

LOCAL ADAPTATION, PHENOTYPIC DIFFERENTIATION, AND HYBRID FITNESS IN DIVERGED NATURAL POPULATIONS OF ARABIDOPSIS LYRATA

(2010) Päivi H. Leinonen et al.   EVOLUTION

INFERRING FITNESS LANDSCAPES

(2010) Ruth G. Shaw et al.   EVOLUTION

Plant phenotypic plasticity in a changing climate

(2010) A.B. Nicotra et al.   TRENDS IN PLANT SCIENCE

Local adaptation in European populations of Arabidopsis lyrata (Brassicaceae)

(2009) P. H. Leinonen et al.   AMERICAN JOURNAL OF BOTANY

A Quantitative Survey of Local Adaptation and Fitness Trade‐Offs

(2009) Joe Hereford   AMERICAN NATURALIST

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Local adaptation occurs along altitudinal gradient despite the existence of gene flow in the alpine plant speciesFestuca eskia

(2009) Héloïse Gonzalo-Turpin et al.   JOURNAL OF ECOLOGY

Unifying Life‐History Analyses for Inference of Fitness and Population Growth

(2008) Ruth G. Shaw et al.   AMERICAN NATURALIST

A Meta-Analysis of Local Adaptation in Plants

(2008) Roosa Leimu et al.   PLoS One