Developmentally linked human DNA hypermethylation is associated with down-modulation, repression, and upregulation of transcription

DNA methylation aberrancies as a guide for surveillance and treatment of human cancers

(2017) Gangning Liang et al.   Epigenetics

Transcriptomic and epigenetic regulation of disuse atrophy and the return to activity in skeletal muscle

(2017) Andrew G. Fisher et al.   FASEB JOURNAL

Distal CpG islands can serve as alternative promoters to transcribe genes with silenced proximal promoters

(2017) Shrutii Sarda et al.   GENOME RESEARCH

Dynamics and Context-Dependent Roles of DNA Methylation

(2017) Christina Ambrosi et al.   JOURNAL OF MOLECULAR BIOLOGY

Intragenic DNA methylation prevents spurious transcription initiation

(2017) Francesco Neri et al.   NATURE

ICF-specific DNMT3B dysfunction interferes with intragenic regulation of mRNA transcription and alternative splicing

(2017) Sole Gatto et al.   NUCLEIC ACIDS RESEARCH

Gene regulatory networks and cell lineages that underlie the formation of skeletal muscle

(2017) Margaret Buckingham   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

DNA methylation of intragenic CpG islands depends on their transcriptional activity during differentiation and disease

(2017) Danuta M. Jeziorska et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Dysregulation of nuclear receptor COUP-TFII impairs skeletal muscle development

(2017) Hui-Ju Lee et al.   Scientific Reports

Dnmt3a and Dnmt3b Associate with Enhancers to Regulate Human Epidermal Stem Cell Homeostasis

(2016) Lorenzo Rinaldi et al.   Cell Stem Cell

Long noncoding RNA (lincRNA), a new paradigm in gene expression control

(2016) Emre Deniz et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

CTCF: making the right connections

(2016) Rodolfo Ghirlando et al.   GENES & DEVELOPMENT

COUP-TFII regulates satellite cell function and muscular dystrophy

(2016) Xin Xie et al.   JOURNAL OF CLINICAL INVESTIGATION

Bivalent Regions of Cytosine Methylation and H3K27 Acetylation Suggest an Active Role for DNA Methylation at Enhancers

(2016) Jessica Charlet et al.   MOLECULAR CELL

An epigenetic switch regulatesde novoDNA methylation at a subset of pluripotency gene enhancers during embryonic stem cell differentiation

(2016) Christopher J. Petell et al.   NUCLEIC ACIDS RESEARCH

Reversible Regulation of Promoter and Enhancer Histone Landscape by DNA Methylation in Mouse Embryonic Stem Cells

(2016) Andrew D. King et al.   Cell Reports

Dnmt3a Regulates Proliferation of Muscle Satellite Cells via p57Kip2

(2016) Masashi Naito et al.   PLoS Genetics

Emerging Molecular and Biological Functions of MBD2, a Reader of DNA Methylation

(2016) Kathleen H. Wood et al.   Frontiers in Genetics

The human cardiac and skeletal muscle proteomes defined by transcriptomics and antibody-based profiling

(2015) Cecilia Lindskog et al.   BMC GENOMICS

Role of PRDM16 and its PR domain in the epigenetic regulation of myogenic and adipogenic genes during transdifferentiation of C2C12 cells

(2015) Xiao Li et al.   GENE

Involvement of orphan nuclear receptor COUP-TFII in cadherin-6 and cadherin-11 regulation: Implications in development and cancer

(2015) Pierre-Paul Bringuier et al.   MECHANISMS OF DEVELOPMENT

Integrative analysis of 111 reference human epigenomes

(2015) Anshul Kundaje et al.   NATURE

Genomic profiling of DNA methyltransferases reveals a role for DNMT3B in genic methylation

(2015) Tuncay Baubec et al.   NATURE

Muscle wasting in disease: molecular mechanisms and promising therapies

(2015) Shenhav Cohen et al.   NATURE REVIEWS DRUG DISCOVERY

dbSUPER: a database of super-enhancers in mouse and human genome

(2015) Aziz Khan et al.   NUCLEIC ACIDS RESEARCH

The Genotype-Tissue Expression (GTEx) pilot analysis: Multitissue gene regulation in humans

(2015) et al.   SCIENCE

On the presence and role of human gene-body DNA methylation

(2015) Daudi Jjingo et al.   Oncotarget

Epigenetic control of adult skeletal muscle stem cell functions

(2014) Jessica Segalés et al.   FEBS Journal

NKX2-5, a modifier of skeletal muscle pathology due to RNA toxicity

(2014) Jordan T. Gladman et al.   HUMAN MOLECULAR GENETICS

Analysis of nascent RNA identifies a unified architecture of initiation regions at mammalian promoters and enhancers

(2014) Leighton J Core et al.   NATURE GENETICS

CG hypomethylation in Lsh-/- mouse embryonic fibroblasts is associated with de novo H3K4me1 formation and altered cellular plasticity

(2014) W. Yu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

DNA cytosine methylation and hydroxymethylation at the borders

(2014) Melanie Ehrlich et al.   Epigenomics

The critical roles of COUP-TFII in tumor progression and metastasis

(2014) Jun Qin et al.   Cell and Bioscience

Whole-genome analysis of 5-hydroxymethylcytosine and 5-methylcytosine at base resolution in the human brain

(2014) Lu Wen et al.   GENOME BIOLOGY

DNA methylation status of NKX2-5, GATA4 and HAND1in patients with tetralogy of fallot

(2013) Wei Sheng et al.   BMC Medical Genomics

Super-Enhancers in the Control of Cell Identity and Disease

(2013) Denes Hnisz et al.   CELL

Intragenic DNA methylation modulates alternative splicing by recruiting MeCP2 to promote exon recognition

(2013) Alika K Maunakea et al.   CELL RESEARCH

Pax3 synergizes with Gli2 and Zic1 in transactivating the Myf5 epaxial somite enhancer

(2013) Charis L. Himeda et al.   DEVELOPMENTAL BIOLOGY

Identification of Pax3 and Zic1 targets in the developing neural crest

(2013) Chang-Joon Bae et al.   DEVELOPMENTAL BIOLOGY

Early de novo DNA methylation and prolonged demethylation in the muscle lineage

(2013) Koji Tsumagari et al.   Epigenetics

Dynamic DNA methylation across diverse human cell lines and tissues

(2013) K. E. Varley et al.   GENOME RESEARCH

Epigenetic memory at embryonic enhancers identified in DNA methylation maps from adult mouse tissues

(2013) Gary C Hon et al.   NATURE GENETICS

A Reference Methylome Database and Analysis Pipeline to Facilitate Integrative and Comparative Epigenomics

(2013) Qiang Song et al.   PLoS One

Global Epigenomic Reconfiguration During Mammalian Brain Development

(2013) R. Lister et al.   SCIENCE

Modeling, simulation and analysis of methylation profiles from reduced representation bisulfite sequencing experiments

(2013) Michelle R. Lacey et al.   Statistical Applications in Genetics and Molecular Biology

DNA methylation and differentiation: HOX genes in muscle cells

(2013) Koji Tsumagari et al.   Epigenetics & Chromatin

Genetic analysis of DNA methylation and gene expression levels in whole blood of healthy human subjects

(2012) Kristel R van Eijk et al.   BMC GENOMICS

Whole-genome bisulfite DNA sequencing of a DNMT3B mutant patient

(2012) Holger Heyn et al.   Epigenetics

Widespread plasticity in CTCF occupancy linked to DNA methylation

(2012) H. Wang et al.   GENOME RESEARCH

Pharyngeal mesoderm regulatory network controls cardiac and head muscle morphogenesis

(2012) I. Harel et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Global DNA hypomethylation coupled to repressive chromatin domain formation and gene silencing in breast cancer

(2011) G. C. Hon et al.   GENOME RESEARCH

Mapping and analysis of chromatin state dynamics in nine human cell types

(2011) Jason Ernst et al.   NATURE

DNA Methylation of the First Exon Is Tightly Linked to Transcriptional Silencing

(2011) Fabienne Brenet et al.   PLoS One

A User's Guide to the Encyclopedia of DNA Elements (ENCODE)

(2011)   PLOS BIOLOGY

Transcriptome analyses based on genetic screens for Pax3 myogenic targets in the mouse embryo

(2010) Mounia Lagha et al.   BMC GENOMICS

The embryonic genes Dkk3, Hoxd8, Hoxd9 and Tbx1 identify muscle types in a diet-independent and fiber-type unrelated way

(2010) Janneke de Wilde et al.   BMC GENOMICS

Conserved role of intragenic DNA methylation in regulating alternative promoters

(2010) Alika K. Maunakea et al.   NATURE

Targeted and genome-scale strategies reveal gene-body methylation signatures in human cells

(2009) Madeleine P Ball et al.   NATURE BIOTECHNOLOGY

ICF, an immunodeficiency syndrome: DNA methyltransferase 3B involvement, chromosome anomalies, and gene dysregulation

(2008) Melanie Ehrlich et al.   AUTOIMMUNITY

Alternative isoform regulation in human tissue transcriptomes

(2008) Eric T. Wang et al.   NATURE

Genome-scale DNA methylation maps of pluripotent and differentiated cells

(2008) Alexander Meissner et al.   NATURE