Isolation and genomic characterization of Novimethylophilus kurashikiensis gen. nov. sp. nov., a new lanthanide-dependent methylotrophic species of Methylophilaceae

Introducing EzBioCloud: a taxonomically united database of 16S rRNA gene sequences and whole-genome assemblies

(2017)   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Culturable Facultative Methylotrophic Bacteria from the Cactus Neobuxbaumia macrocephala Possess the Locus xoxF and Consume Methanol in the Presence of Ce3+ and Ca2+

(2017) María del Rocío Bustillos-Cristales et al.   MICROBES AND ENVIRONMENTS

Functional Role of Lanthanides in Enzymatic Activity and Transcriptional Regulation of Pyrroloquinoline Quinone-Dependent Alcohol Dehydrogenases in Pseudomonas putida KT2440

(2017) Matthias Wehrmann et al.   mBio

Characterization and evolution of an activator-independent methanol dehydrogenase from Cupriavidus necator N-1

(2016) Tung-Yun Wu et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Dyadobacter endophyticus sp. nov., an endophytic bacterium isolated from maize root

(2016)   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Pyrroloquinoline Quinone Ethanol Dehydrogenase in Methylobacterium extorquens AM1 Extends Lanthanide-Dependent Metabolism to Multicarbon Substrates

(2016) Nathan M. Good et al.   JOURNAL OF BACTERIOLOGY

Lanthanide-Dependent Regulation of Methanol Oxidation Systems in Methylobacterium extorquens AM1 and Their Contribution to Methanol Growth

(2016) Huong N. Vu et al.   JOURNAL OF BACTERIOLOGY

BlastKOALA and GhostKOALA: KEGG Tools for Functional Characterization of Genome and Metagenome Sequences

(2016) Minoru Kanehisa et al.   JOURNAL OF MOLECULAR BIOLOGY

Genome Characteristics of Two Novel Type I Methanotrophs Enriched from North Sea Sediments Containing Exclusively a Lanthanide-Dependent XoxF5-Type Methanol Dehydrogenase

(2016) Bram Vekeman et al.   MICROBIAL ECOLOGY

Lanthanide-dependent cross-feeding of methane-derived carbon is linked by microbial community interactions

(2016) Sascha M. B. Krause et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Bacterial reference genes for gene expression studies by RT-qPCR: survey and analysis

(2015) Danilo J. P. Rocha et al.   ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY

XoxFencoding an alternative methanol dehydrogenase is widespread in coastal marine environments

(2015) Martin Taubert et al.   ENVIRONMENTAL MICROBIOLOGY

Complete genome sequence of Methylophilus sp. TWE2 isolated from methane oxidation enrichment culture of tap-water

(2015) Fei Xia et al.   JOURNAL OF BIOTECHNOLOGY

Multilocus sequence analysis (MLSA) in prokaryotic taxonomy

(2015) Stefanie P. Glaeser et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

Diversity and Habitat Preferences of Cultivated and Uncultivated Aerobic Methanotrophic Bacteria Evaluated Based on pmoA as Molecular Marker

(2015) Claudia Knief   Frontiers in Microbiology

PQQ-dependent methanol dehydrogenases: rare-earth elements make a difference

(2014) Jan T. Keltjens et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

The Expanded Diversity of Methylophilaceae from Lake Washington through Cultivation and Genomic Sequencing of Novel Ecotypes

(2014) David A. C. Beck et al.   PLoS One

Rare earth metals are essential for methanotrophic life in volcanic mudpots

(2013) Arjan Pol et al.   ENVIRONMENTAL MICROBIOLOGY

Methyloversatilis thermotolerans sp. nov., a novel thermotolerant facultative methylotroph isolated from a hot spring

(2013) N. V. Doronina et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

High-Throughput Identification and Screening of Novel Methylobacterium Species Using Whole-Cell MALDI-TOF/MS Analysis

(2012) Akio Tani et al.   PLoS One

Purification, crystallization and preliminary X-ray crystallographic analysis of a methanol dehydrogenase from the marine bacteriumMethylophaga aminisulfidivoransMPT

(2011) Jin Myung Choi et al.   Acta Crystallographica Section F-Structural Biology and Crystallization Communications

DECIPHER, a Search-Based Approach to Chimera Identification for 16S rRNA Sequences

(2011) Erik S. Wright et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Modularity of methylotrophy, revisited

(2011) Ludmila Chistoserdova   ENVIRONMENTAL MICROBIOLOGY

Methylomonas koyamae sp. nov., a type I methane-oxidizing bacterium from floodwater of a rice paddy field

(2011) T. Ogiso et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Novel methylotrophic isolates from lake sediment, description of Methylotenera versatilis sp. nov. and emended description of the genus Methylotenera

(2011) M. G. Kalyuzhnaya et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Complete Genome Sequence of the Type Strain Cupriavidus necator N-1

(2011) A. Poehlein et al.   JOURNAL OF BACTERIOLOGY

XoxF Is Required for Expression of Methanol Dehydrogenase in Methylobacterium extorquens AM1

(2011) E. Skovran et al.   JOURNAL OF BACTERIOLOGY

Genomes of Three Methylotrophs from a Single Niche Reveal the Genetic and Metabolic Divergence of the Methylophilaceae

(2011) A. Lapidus et al.   JOURNAL OF BACTERIOLOGY

Molecular structure of La3+-induced methanol dehydrogenase-like protein in Methylobacterium radiotolerans

(2011) Yoshihisa Hibi et al.   JOURNAL OF BIOSCIENCE AND BIOENGINEERING

Molecular structure and gene analysis of Ce3+-induced methanol dehydrogenase of Bradyrhizobium sp. MAFF211645

(2011) Nanung Agus Fitriyanto et al.   JOURNAL OF BIOSCIENCE AND BIOENGINEERING

MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

(2011) K. Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

Methylobacillus arboreus sp. nov., and Methylobacillus gramineus sp. nov., novel non-pigmented obligately methylotrophic bacteria associated with plants

(2011) Anna A. Gogleva et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

Functional investigation of methanol dehydrogenase-like protein XoxF in Methylobacterium extorquens AM1

(2010) S. Schmidt et al.   MICROBIOLOGY-SGM

Digital DNA-DNA hybridization for microbial species delineation by means of genome-to-genome sequence comparison

(2010) Alexander F. Auch et al.   Standards in Genomic Sciences

The Expanding World of Methylotrophic Metabolism

(2009) Ludmila Chistoserdova et al.   Annual Review of Microbiology

Methylophilus flavus sp. nov. and Methylophilus luteus sp. nov., aerobic, methylotrophic bacteria associated with plants

(2009) A. A. Gogleva et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Genetics of the glutamate-mediated methylamine utilization pathway in the facultative methylotrophic beta-proteobacteriumMethyloversatilis universalisFAM5

(2009) Ekaterina Latypova et al.   MOLECULAR MICROBIOLOGY

Shifting the genomic gold standard for the prokaryotic species definition

(2009) Michael Richter et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Methylophilaceaelink methanol oxidation to denitrification in freshwater lake sediment as suggested by stable isotope probing and pure culture analysis

(2009) Marina G. Kalyuhznaya et al.   Environmental Microbiology Reports

Complete genome sequence of Dyadobacter fermentans type strain (NS114T)

(2009) Elke Lang et al.   Standards in Genomic Sciences

Characterization of a Novel Methanol Dehydrogenase in Representatives of Burkholderiales: Implications for Environmental Detection of Methylotrophy and Evidence for Convergent Evolution

(2008) M. G. Kalyuzhnaya et al.   JOURNAL OF BACTERIOLOGY

High-resolution metagenomics targets specific functional types in complex microbial communities

(2008) Marina G Kalyuzhnaya et al.   NATURE BIOTECHNOLOGY

The All-Species Living Tree project: A 16S rRNA-based phylogenetic tree of all sequenced type strains

(2008) Pablo Yarza et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY