Metabolic versatility of a novel N2 -fixing Alphaproteobacterium isolated from a marine oxygen minimum zone

Phylogenomics of Rhodobacteraceae reveals evolutionary adaptation to marine and non-marine habitats

(2017) Meinhard Simon et al.   ISME Journal

Diversity and activity of nitrogen-fixing communities across ocean basins

(2017) Mary R. Gradoville et al.   LIMNOLOGY AND OCEANOGRAPHY

Modification of a High-Throughput Automatic Microbial Cell Enumeration System for Shipboard Analyses

(2016) Christin M. Bennke et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

UniProt: the universal protein knowledgebase

(2016)   NUCLEIC ACIDS RESEARCH

Contribution of mono and polysaccharides to heterotrophic N2 fixation at the eastern Mediterranean coastline

(2016) E. Rahav et al.   Scientific Reports

Comparative genomics and mutagenesis analyses of choline metabolism in the marineRoseobacterclade

(2015) Ian Lidbury et al.   ENVIRONMENTAL MICROBIOLOGY

CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes

(2015) Donovan H. Parks et al.   GENOME RESEARCH

Confluentimicrobium naphthalenivorans sp. nov., a naphthalene-degrading bacterium isolated from sea-tidal-flat sediment, and emended description of the genus Confluentimicrobium Park et al. 2015

(2015) Hye Im Jeong et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Size-fraction partitioning of community gene transcription and nitrogen metabolism in a marine oxygen minimum zone

(2015) Sangita Ganesh et al.   ISME Journal

Mesopelagic N2 Fixation Related to Organic Matter Composition in the Solomon and Bismarck Seas (Southwest Pacific)

(2015) Mar Benavides et al.   PLoS One

Genomics and Ecophysiology of Heterotrophic Nitrogen-Fixing Bacteria Isolated from Estuarine Surface Water

(2015) Mikkel Bentzon-Tilia et al.   mBio

Temporal and spatial variability of biological nitrogen fixation off the upwelling system of central Chile (35-38.5°S)

(2015) Camila Fernandez et al.   JOURNAL OF GEOPHYSICAL RESEARCH-OCEANS

Cultivation and isolation of N2-fixing bacteria from suboxic waters in the Baltic Sea

(2014) Mikkel Bentzon-Tilia et al.   FEMS MICROBIOLOGY ECOLOGY

Heterotrophic bacteria as major nitrogen fixers in the euphotic zone of the Indian Ocean

(2014) Takuhei Shiozaki et al.   GLOBAL BIOGEOCHEMICAL CYCLES

Thiobacimonas profunda gen. nov., sp. nov., a member of the family Rhodobacteraceae isolated from deep-sea water

(2014) S. Li et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Trimethylamine and trimethylamine N-oxide are supplementary energy sources for a marine heterotrophic bacterium: implications for marine carbon and nitrogen cycling

(2014) Ian DEA Lidbury et al.   ISME Journal

Facets of diazotrophy in the oxygen minimum zone waters off Peru

(2014) Carolin R Loescher et al.   ISME Journal

Evolutionary Ecology of the Marine Roseobacter Clade

(2014) Haiwei Luo et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Master recyclers: features and functions of bacteria associated with phytoplankton blooms

(2014) Alison Buchan et al.   NATURE REVIEWS MICROBIOLOGY

Isolation of heterotrophic diazotrophic bacteria from estuarine surface waters

(2013) Hanna Farnelid et al.   ENVIRONMENTAL MICROBIOLOGY

Active nitrogen-fixing heterotrophic bacteria at and below the chemocline of the central Baltic Sea

(2013) Hanna Farnelid et al.   ISME Journal

Metagenomic analysis of size-fractionated picoplankton in a marine oxygen minimum zone

(2013) Sangita Ganesh et al.   ISME Journal

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data

(2013) Chen-Shan Chin et al.   NATURE METHODS

The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases

(2013) Ron Caspi et al.   NUCLEIC ACIDS RESEARCH

The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST)

(2013) Ross Overbeek et al.   NUCLEIC ACIDS RESEARCH

Pfam: the protein families database

(2013) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

Dinitrogen fixation in aphotic oxygenated marine environments

(2013) Eyal Rahav et al.   Frontiers in Microbiology

SINA: Accurate high-throughput multiple sequence alignment of ribosomal RNA genes

(2012) Elmar Pruesse et al.   BIOINFORMATICS

Look@NanoSIMS - a tool for the analysis of nanoSIMS data in environmental microbiology

(2012) Lubos Polerecky et al.   ENVIRONMENTAL MICROBIOLOGY

Transcriptionally active heterotrophic diazotrophs are widespread in the upper water column of the Arabian Sea

(2012) Clare Bird et al.   FEMS MICROBIOLOGY ECOLOGY

Transcriptome profiling of a curdlan-producing Agrobacterium reveals conserved regulatory mechanisms of exopolysaccharide biosynthesis

(2012) Anne M Ruffing et al.   Microbial Cell Factories

Doubling of marine dinitrogen-fixation rates based on direct measurements

(2012) Tobias Großkopf et al.   NATURE

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Diversity and distribution of diazotrophic communities in the South China Sea deep basin with mesoscale cyclonic eddy perturbations

(2011) Yao Zhang et al.   FEMS MICROBIOLOGY ECOLOGY

Nitrogen fixation in the South Atlantic Gyre and the Benguela Upwelling System

(2011) Jill A. Sohm et al.   GEOPHYSICAL RESEARCH LETTERS

Heterotrophic organisms dominate nitrogen fixation in the South Pacific Gyre

(2011) Hannah Halm et al.   ISME Journal

Nitrogen Fixation in Denitrified Marine Waters

(2011) Camila Fernandez et al.   PLoS One

Nitrogenase Gene Amplicons from Global Marine Surface Waters Are Dominated by Genes of Non-Cyanobacteria

(2011) Hanna Farnelid et al.   PLoS One

Nitrogen fixation by marine cyanobacteria

(2011) Jonathan P. Zehr   TRENDS IN MICROBIOLOGY

Nitrogenase genes in non-cyanobacterial plankton: prevalence, diversity and regulation in marine waters

(2010) L Riemann et al.   AQUATIC MICROBIAL ECOLOGY

Microreview: Type IV secretion systems: versatility and diversity in function

(2010) Karin Wallden et al.   CELLULAR MICROBIOLOGY

Genome characteristics of a generalist marine bacterial lineage

(2010) Ryan J Newton et al.   ISME Journal

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

(2010) Morgan N. Price et al.   PLoS One

Methodological Underestimation of Oceanic Nitrogen Fixation Rates

(2010) Wiebke Mohr et al.   PLoS One

New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

(2010) Stéphane Guindon et al.   SYSTEMATIC BIOLOGY

Digital DNA-DNA hybridization for microbial species delineation by means of genome-to-genome sequence comparison

(2010) Alexander F. Auch et al.   Standards in Genomic Sciences

Shifting the genomic gold standard for the prokaryotic species definition

(2009) Michael Richter et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Abundances and Distributions of the Dominant nifH Phylotypes in the Northern Atlantic Ocean

(2008) R. J. Langlois et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

A single-cell view on the ecophysiology of anaerobic phototrophic bacteria

(2008) N. Musat et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA