SLAM-ITseq: sequencing cell type-specific transcriptomes without cell sorting

Cell-type specific sequencing of microRNAs from complex animal tissues

(2018) Chiara Alberti et al.   NATURE METHODS

SLAM-seq defines direct gene-regulatory functions of the BRD4-MYC axis

(2018) Matthias Muhar et al.   SCIENCE

Thiol-linked alkylation of RNA to assess expression dynamics

(2017) Veronika A Herzog et al.   NATURE METHODS

cTag-PAPERCLIP Reveals Alternative Polyadenylation Promotes Cell-Type Specific Protein Diversity and Shifts Araf Isoforms with Microglia Activation

(2017) Hun-Way Hwang et al.   NEURON

EC-tagging allows cell type-specific RNA analysis

(2017) Naoki Hida et al.   NUCLEIC ACIDS RESEARCH

PANTHER version 11: expanded annotation data from Gene Ontology and Reactome pathways, and data analysis tool enhancements

(2016) Huaiyu Mi et al.   NUCLEIC ACIDS RESEARCH

Identification of sensory hair-cell transcripts by thiouracil-tagging in zebrafish

(2015) Timothy Erickson et al.   BMC GENOMICS

Does FACS perturb gene expression?

(2015) Graham M. Richardson et al.   CYTOMETRY PART A

An RNA-Sequencing Transcriptome and Splicing Database of Glia, Neurons, and Vascular Cells of the Cerebral Cortex

(2014) Y. Zhang et al.   JOURNAL OF NEUROSCIENCE

Applying thiouracil tagging to mouse transcriptome analysis

(2014) Leslie Gay et al.   Nature Protocols

Mouse TU tagging: a chemical/genetic intersectional method for purifying cell type-specific nascent RNA

(2013) L. Gay et al.   GENES & DEVELOPMENT

Evaluation of TRAP-sequencing technology with a versatile conditional mouse model

(2013) Mike Hupe et al.   NUCLEIC ACIDS RESEARCH

Transcriptional Control of Adipose Lipid Handling by IRF4

(2011) Jun Eguchi et al.   Cell Metabolism

REVIGO Summarizes and Visualizes Long Lists of Gene Ontology Terms

(2011) Fran Supek et al.   PLoS One

Tracing the Derivation of Embryonic Stem Cells from the Inner Cell Mass by Single-Cell RNA-Seq Analysis

(2010) Fuchou Tang et al.   Cell Stem Cell

On the beta-binomial model for analysis of spectral count data in label-free tandem mass spectrometry-based proteomics

(2009) Thang V. Pham et al.   BIOINFORMATICS

TU-tagging: cell type–specific RNA isolation from intact complex tissues

(2009) Michael R Miller et al.   NATURE METHODS