Genome-wide (ChIP-seq) identification of target genes regulated by BdbZIP10 during paraquat-induced oxidative stress

agriGO v2.0: a GO analysis toolkit for the agricultural community, 2017 update

(2017) Tian Tian et al.   NUCLEIC ACIDS RESEARCH

A Central Role for Triacylglycerol in Membrane Lipid Breakdown, Fatty Acid β -Oxidation, and Plant Survival under Extended Darkness

(2017) Jilian Fan et al.   PLANT PHYSIOLOGY

Phylogenetic analysis of F-bZIP transcription factors indicates conservation of the zinc deficiency response across land plants

(2017) Pedro Humberto Castro et al.   Scientific Reports

Recent Advances in Utilizing Transcription Factors to Improve Plant Abiotic Stress Tolerance by Transgenic Technology

(2016) Hongyan Wang et al.   Frontiers in Plant Science

Genome-wide evolutionary characterization and analysis of bZIP transcription factors and their expression profiles in response to multiple abiotic stresses in Brachypodium distachyon

(2015) Xiang Liu et al.   BMC GENOMICS

Identification of putative target genes of bZIP19, a transcription factor essential for Arabidopsis adaptation to Zn deficiency in roots

(2015) Shoko Inaba et al.   PLANT JOURNAL

BIDCHIPS: bias decomposition and removal from ChIP-seq data clarifies true binding signal and its functional correlates

(2015) Parameswaran Ramachandran et al.   Epigenetics & Chromatin

Evolution of transcription factor function as a mechanism for changing metazoan developmental gene regulatory networks

(2015) Alys M Cheatle Jarvela et al.   EvoDevo

The cytochrome P450 superfamily: Key players in plant development and defense

(2015) Jun XU et al.   Journal of Integrative Agriculture

Genome-wide analysis and expression profile of the bZIP transcription factor gene family in grapevine (Vitis vinifera)

(2014) Jinyi Liu et al.   BMC GENOMICS

Identification of Polyamine Transporters in Plants: Paraquat Transport Provides Crucial Clues

(2014) Miki Fujita et al.   PLANT AND CELL PHYSIOLOGY

Arabidopsis Lipins, PDAT1 Acyltransferase, and SDP1 Triacylglycerol Lipase Synergistically Direct Fatty Acids toward  -Oxidation, Thereby Maintaining Membrane Lipid Homeostasis

(2014) J. Fan et al.   PLANT CELL

Enhanced Oxidative Stress Resistance through Activation of a Zinc Deficiency Transcription Factor in Brachypodium distachyon

(2014) K. M. Glover-Cutter et al.   PLANT PHYSIOLOGY

Regulation of Copper Homeostasis and Biotic Interactions by MicroRNA 398b in Common Bean

(2014) Loreto Naya et al.   PLoS One

Structure, Function and Networks of Transcription Factors Involved in Abiotic Stress Responses

(2013) Søren Lindemose et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Phospholipid:diacylglycerol acyltransferase-mediated triacylglycerol biosynthesis is crucial for protection against fatty acid-induced cell death in growing tissues of Arabidopsis

(2013) Jilian Fan et al.   PLANT JOURNAL

Multifunctionality and diversity of GDSL esterase/lipase gene family in rice (Oryza sativa L. japonica) genome: new insights from bioinformatics analysis

(2012) Hanna Chepyshko et al.   BMC GENOMICS

Sequence features and chromatin structure around the genomic regions bound by 119 human transcription factors

(2012) J. Wang et al.   GENOME RESEARCH

Summarizing and correcting the GC content bias in high-throughput sequencing

(2012) Yuval Benjamini et al.   NUCLEIC ACIDS RESEARCH

DREME: motif discovery in transcription factor ChIP-seq data

(2011) Timothy L. Bailey   BIOINFORMATICS

MEME-ChIP: motif analysis of large DNA datasets

(2011) Philip Machanick et al.   BIOINFORMATICS

Phytozome: a comparative platform for green plant genomics

(2011) David M. Goodstein et al.   NUCLEIC ACIDS RESEARCH

BigWig and BigBed: enabling browsing of large distributed datasets

(2010) W. J. Kent et al.   BIOINFORMATICS

agriGO: a GO analysis toolkit for the agricultural community

(2010) Zhou Du et al.   NUCLEIC ACIDS RESEARCH

Arabidopsis thaliana transcription factors bZIP19 and bZIP23 regulate the adaptation to zinc deficiency

(2010) A. G. L. Assuncao et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

New roles for acyl-CoA-binding proteins (ACBPs) in plant development, stress responses and lipid metabolism

(2010) Shi Xiao et al.   PROGRESS IN LIPID RESEARCH

The Arabidopsis basic leucine zipper transcription factor AtbZIP24 regulates complex transcriptional networks involved in abiotic stress resistance

(2009) Oksoon Yang et al.   GENE

Increased tolerance to oxidative stress in transgenic tobacco expressing a wheat oxalate oxidase gene via induction of antioxidant enzymes is mediated by H2O2

(2009) Xiaoqing Wan et al.   PHYSIOLOGIA PLANTARUM

AtHMA1 contributes to the detoxification of excess Zn(II) in Arabidopsis

(2009) Yu-Young Kim et al.   PLANT JOURNAL

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

QuantPrime - a flexible tool for reliable high-throughput primer design for quantitative PCR

(2008) Samuel Arvidsson et al.   BMC BIOINFORMATICS

Exploring valid reference genes for gene expression studies in Brachypodium distachyon by real-time PCR

(2008) Shin-Young Hong et al.   BMC PLANT BIOLOGY

AtHMA1 Is a Thapsigargin-sensitive Ca2+/Heavy Metal Pump

(2008) Ignacio Moreno et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Substantial biases in ultra-short read data sets from high-throughput DNA sequencing

(2008) J. C. Dohm et al.   NUCLEIC ACIDS RESEARCH

Soybean GmbZIP44, GmbZIP62 and GmbZIP78 genes function as negative regulator of ABA signaling and confer salt and freezing tolerance in transgenic Arabidopsis

(2008) Yong Liao et al.   PLANTA

The Role of bZIP Transcription Factors in Green Plant Evolution: Adaptive Features Emerging from Four Founder Genes

(2008) Luiz Gustavo Guedes Corrêa et al.   PLoS One

Model-based Analysis of ChIP-Seq (MACS)

(2008) Yong Zhang et al.   GENOME BIOLOGY