In silico comparative analysis of GGDEF and EAL domain signaling proteins from the Azospirillum genomes

Mutation of the cyclic di-GMP phosphodiesterase gene in Burkholderia lata SK875 attenuates virulence and enhances biofilm formation

(2017) Hae-In Jung et al.   JOURNAL OF MICROBIOLOGY

Azospirillum brasilense Chemotaxis Depends on Two Signaling Pathways Regulating Distinct Motility Parameters

(2016) Tanmoy Mukherjee et al.   JOURNAL OF BACTERIOLOGY

Progress in Understanding the Molecular Basis Underlying Functional Diversification of Cyclic Dinucleotide Turnover Proteins

(2016) Ute Römling et al.   JOURNAL OF BACTERIOLOGY

C-di-GMP Synthesis: Structural Aspects of Evolution, Catalysis and Regulation

(2016) Tilman Schirmer   JOURNAL OF MOLECULAR BIOLOGY

First Azospirillum genome from aquatic environments: Whole-genome sequence of Azospirillum thiophilum BV-S T , a novel diazotroph harboring a capacity of sulfur-chemolithotrophy from a sulfide spring

(2016) Yunyoung Kwak et al.   Marine Genomics

Trigger phosphodiesterases as a novel class of c-di-GMP effector proteins

(2016) Regine Hengge   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

The cyclic-di-GMP diguanylate cyclase CdgA has a role in biofilm formation and exopolysaccharide production in Azospirillum brasilense

(2016) Alberto Ramírez-Mata et al.   RESEARCH IN MICROBIOLOGY

Cache Domains That are Homologous to, but Different from PAS Domains Comprise the Largest Superfamily of Extracellular Sensors in Prokaryotes

(2016) Amit A. Upadhyay et al.   PLoS Computational Biology

Identification of a Chemoreceptor for C2and C3Carboxylic Acids

(2015) Vanina García et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Membrane-anchored MucR mediates nitrate-dependent regulation of alginate production in Pseudomonas aeruginosa

(2015) Yajie Wang et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Bacterial diguanylate cyclases: Structure, function and mechanism in exopolysaccharide biofilm development

(2015) Chris G. Whiteley et al.   BIOTECHNOLOGY ADVANCES

Genome-wide survey of two-component signal transduction systems in the plant growth-promoting bacterium Azospirillum

(2015) Stéphanie Borland et al.   BMC GENOMICS

Genome-Based Comparison of Cyclic Di-GMP Signaling in Pathogenic and Commensal Escherichia coli Strains

(2015) Tatyana L. Povolotsky et al.   JOURNAL OF BACTERIOLOGY

Chemotaxis Control of Transient Cell Aggregation

(2015) Gladys Alexandre   JOURNAL OF BACTERIOLOGY

The I-TASSER Suite: protein structure and function prediction

(2015) Jianyi Yang et al.   NATURE METHODS

A Pterin-Dependent Signaling Pathway Regulates a Dual-Function Diguanylate Cyclase-Phosphodiesterase Controlling Surface Attachment in Agrobacterium tumefaciens

(2015) Nathan Feirer et al.   mBio

Genomic analysis of cyclic-di-GMP-related genes in rhizobial type strains and functional analysis in Rhizobium etli

(2014) Shanjun Gao et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Formation and dimerization of the phosphodiesterase active site of thePseudomonas aeruginosaMorA, a bi-functional c-di-GMP regulator

(2014) Curtis William Phippen et al.   FEBS LETTERS

CBS domains: Ligand binding sites and conformational variability

(2013) June Ereño-Orbea et al.   ARCHIVES OF BIOCHEMISTRY AND BIOPHYSICS

The EAL domain protein YciR acts as a trigger enzyme in a c-di-GMP signalling cascade in E. coli biofilm control

(2013) Sandra Lindenberg et al.   EMBO JOURNAL

Genome wide profiling ofAzospirillum lipoferum4B gene expression during interaction with rice roots

(2013) Benoît Drogue et al.   FEMS MICROBIOLOGY ECOLOGY

PdeB, a Cyclic Di-GMP-Specific Phosphodiesterase That Regulates Shewanella oneidensis MR-1 Motility and Biofilm Formation

(2013) L. Chao et al.   JOURNAL OF BACTERIOLOGY

Cyclic di-GMP: the First 25 Years of a Universal Bacterial Second Messenger

(2013) U. Romling et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Advances in plant growth-promoting bacterial inoculant technology: formulations and practical perspectives (1998–2013)

(2013) Yoav Bashan et al.   PLANT AND SOIL

Genetic dissection of a motility-associated c-di-GMP signalling protein ofPseudomonas putida

(2013) Sofia Österberg et al.   Environmental Microbiology Reports

Integration of the Second Messenger c-di-GMP into the Chemotactic Signaling Pathway

(2013) M. H. Russell et al.   mBio

Comparative analysis of diguanylate cyclase and phosphodiesterase genes in Klebsiella pneumoniae

(2012) Diana P Cruz et al.   BMC MICROBIOLOGY

Azospirillum humicireducens sp. nov., a nitrogen-fixing bacterium isolated from a microbial fuel cell

(2012) S. Zhou et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Structural Insights into the Regulatory Mechanism of the Response Regulator RocR from Pseudomonas aeruginosa in Cyclic Di-GMP Signaling

(2012) Ming Wei Chen et al.   JOURNAL OF BACTERIOLOGY

Nucleic Acids Research: VOLUME 40 ISSUE 22 2012

(2012)   NUCLEIC ACIDS RESEARCH

Enzymatically Active and Inactive Phosphodiesterases and Diguanylate Cyclases Are Involved in Regulation of Motility or Sessility in Escherichia coli CFT073

(2012) R. R. Spurbeck et al.   mBio

Genome Sequence of Azospirillum brasilense CBG497 and Comparative Analyses of Azospirillum Core and Accessory Genomes provide Insight into Niche Adaptation

(2012) Florence Wisniewski-Dyé et al.   Genes

Shewanella oneidensis MR-1 Sensory Box Protein Involved in Aerobic and Anoxic Growth

(2011) A. Sundararajan et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The bacterial second messenger c-di-GMP: mechanisms of signalling

(2011) Erez Mills et al.   CELLULAR MICROBIOLOGY

Key physiological properties contributing to rhizosphere adaptation and plant growth promotion abilities of Azospirillum brasilense

(2011) Sharon Fibach-Paldi et al.   FEMS MICROBIOLOGY LETTERS

SMART 7: recent updates to the protein domain annotation resource

(2011) I. Letunic et al.   NUCLEIC ACIDS RESEARCH

Azospirillum Genomes Reveal Transition of Bacteria from Aquatic to Terrestrial Environments

(2011) Florence Wisniewski-Dyé et al.   PLoS Genetics

GGDEF and EAL proteins play different roles in the control of Sinorhizobium meliloti growth, motility, exopolysaccharide production, and competitive nodulation on host alfalfa

(2010) Yiwen Wang et al.   ACTA BIOCHIMICA ET BIOPHYSICA SINICA

Signaling Mechanisms of HAMP Domains in Chemoreceptors and Sensor Kinases

(2010) John S. Parkinson   Annual Review of Microbiology

Ligand-Binding PAS Domains in a Genomic, Cellular, and Structural Context

(2010) Jonathan T. Henry et al.   Annual Review of Microbiology

Complete Genomic Structure of the Cultivated Rice Endophyte Azospirillum sp. B510

(2010) T. Kaneko et al.   DNA RESEARCH

Azospirillum thiophilum sp. nov., a diazotrophic bacterium isolated from a sulfide spring

(2010) K. Lavrinenko et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Structural Insight into the Mechanism of c-di-GMP Hydrolysis by EAL Domain Phosphodiesterases

(2010) Anatoli Tchigvintsev et al.   JOURNAL OF MOLECULAR BIOLOGY

A new bioinformatics analysis tools framework at EMBL-EBI

(2010) M. Goujon et al.   NUCLEIC ACIDS RESEARCH

Comparative genomics of cyclic-di-GMP signalling in bacteria: post-translational regulation and catalytic activity

(2010) Aswin S.N. Seshasayee et al.   NUCLEIC ACIDS RESEARCH

CDD: a Conserved Domain Database for the functional annotation of proteins

(2010) A. Marchler-Bauer et al.   NUCLEIC ACIDS RESEARCH

Introducing the bacterial ‘chromid’: not a chromosome, not a plasmid

(2010) Peter W. Harrison et al.   TRENDS IN MICROBIOLOGY

Characterization of chsA, a new gene controlling the chemotactic response in Azospirillum brasilense Sp7

(2009) Ricardo Carreño-López et al.   ARCHIVES OF MICROBIOLOGY

Protein comparison at the domain architecture level

(2009) Byungwook Lee et al.   BMC BIOINFORMATICS

Regulation of c-di-GMP metabolism in biofilms

(2009) Kristina Jonas et al.   Future Microbiology

The Functional Role of a Conserved Loop in EAL Domain-Based Cyclic di-GMP-Specific Phosphodiesterase

(2009) F. Rao et al.   JOURNAL OF BACTERIOLOGY

Determinants for the Activation and Autoinhibition of the Diguanylate Cyclase Response Regulator WspR

(2009) Nabanita De et al.   JOURNAL OF MOLECULAR BIOLOGY

Structural and mechanistic determinants of c-di-GMP signalling

(2009) Tilman Schirmer et al.   NATURE REVIEWS MICROBIOLOGY

The Pfam protein families database

(2009) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

The MiST2 database: a comprehensive genomics resource on microbial signal transduction

(2009) Luke E. Ulrich et al.   NUCLEIC ACIDS RESEARCH

LapD is a bis-(3',5')-cyclic dimeric GMP-binding protein that regulates surface attachment by Pseudomonas fluorescens Pf0-1

(2009) P. D. Newell et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

MucR, a Novel Membrane-Associated Regulator of Alginate Biosynthesis in Pseudomonas aeruginosa

(2008) I. D. Hay et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

I-TASSER server for protein 3D structure prediction

(2008) Yang Zhang   BMC BIOINFORMATICS

The RAST Server: Rapid Annotations using Subsystems Technology

(2008) Ramy K Aziz et al.   BMC GENOMICS

Function of a Chemotaxis-Like Signal Transduction Pathway in Modulating Motility, Cell Clumping, and Cell Length in the Alphaproteobacterium Azospirillum brasilense

(2008) A. N. Bible et al.   JOURNAL OF BACTERIOLOGY

Catalytic Mechanism of Cyclic Di-GMP-Specific Phosphodiesterase: a Study of the EAL Domain-Containing RocR from Pseudomonas aeruginosa

(2008) F. Rao et al.   JOURNAL OF BACTERIOLOGY

Phosphorylation-Independent Regulation of the Diguanylate Cyclase WspR

(2008) Nabanita De et al.   PLOS BIOLOGY