A microbiome case-control study of recurrent acute otitis media identified potentially protective bacterial genera

Microbiomes of the normal middle ear and ears with chronic otitis media

(2017) Shujiro B. Minami et al.   LARYNGOSCOPE

Relationship of the Middle Ear Effusion Microbiome to Secretory Mucin Production in Pediatric Patients With Chronic Otitis Media

(2017) Anna Krueger et al.   PEDIATRIC INFECTIOUS DISEASE JOURNAL

The microbiome of otitis media with effusion

(2016) Chun Ling Chan et al.   LARYNGOSCOPE

Corynebacterium accolens Releases Antipneumococcal Free Fatty Acids from Human Nostril and Skin Surface Triacylglycerols

(2016) Lindsey Bomar et al.   mBio

Intestinal microbiome is related to lifetime antibiotic use in Finnish pre-school children

(2016) Katri Korpela et al.   Nature Communications

Haemophilus haemolyticus Interaction with Host Cells Is Different to Nontypeable Haemophilus influenzae and Prevents NTHi Association with Epithelial Cells

(2016) Janessa L. Pickering et al.   Frontiers in Cellular and Infection Microbiology

Comparison of placenta samples with contamination controls does not provide evidence for a distinct placenta microbiota

(2016) Abigail P. Lauder et al.   Microbiome

Extensive Strain-Level Copy-Number Variation across Human Gut Microbiome Species

(2015) Sharon Greenblum et al.   CELL

The Infant Nasopharyngeal Microbiome Impacts Severity of Lower Respiratory Infection and Risk of Asthma Development

(2015) Shu Mei Teo et al.   Cell Host & Microbe

Streptococcus salivarius 24SMB administered by nasal spray for the prevention of acute otitis media in otitis-prone children

(2015) P. Marchisio et al.   EUROPEAN JOURNAL OF CLINICAL MICROBIOLOGY & INFECTIOUS DISEASES

The microbiome of otitis media with effusion in Indigenous Australian children

(2015) Jake Jervis-Bardy et al.   INTERNATIONAL JOURNAL OF PEDIATRIC OTORHINOLARYNGOLOGY

Bifidobacterium animalis subsp. lactis BB-12 in reducing the risk of infections in early childhood

(2015) Teemu J. Taipale et al.   PEDIATRIC RESEARCH

The role of the local microbial ecosystem in respiratory health and disease

(2015) Wouter A. A. de Steenhuijsen Piters et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Staphylococcus aureus and the ecology of the nasal microbiome

(2015) C. M. Liu et al.   Science Advances

The adult nasopharyngeal microbiome as a determinant of pneumococcal acquisition

(2015) Amelieke JH Cremers et al.   Microbiome

Early Respiratory Microbiota Composition Determines Bacterial Succession Patterns and Respiratory Health in Children

(2014) Giske Biesbroek et al.   AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE

Reagent and laboratory contamination can critically impact sequence-based microbiome analyses

(2014) Susannah J Salter et al.   BMC BIOLOGY

Correlation of nasopharyngeal cultures prior to and at onset of acute otitis media with middle ear fluid cultures

(2014) Ravinder Kaur et al.   BMC INFECTIOUS DISEASES

Turicella otitidis and Corynebacterium auris: 20 years on

(2013) A. von Graevenitz et al.   INFECTION

Differential abundance analysis for microbial marker-gene surveys

(2013) Joseph N Paulson et al.   NATURE METHODS

UPARSE: highly accurate OTU sequences from microbial amplicon reads

(2013) Robert C Edgar   NATURE METHODS

The SILVA and “All-species Living Tree Project (LTP)” taxonomic frameworks

(2013) Pelin Yilmaz et al.   NUCLEIC ACIDS RESEARCH

Evaluation of Concordance Between the Microorganisms Detected in the Nasopharynx and Middle Ear of Children With Otitis Media

(2013) Thijs M. A. van Dongen et al.   PEDIATRIC INFECTIOUS DISEASE JOURNAL

Probiotics and Prebiotics in Preventing Episodes of Acute Otitis Media in High-Risk Children

(2013) Robert Cohen et al.   PEDIATRIC INFECTIOUS DISEASE JOURNAL

The Variability of the 16S rRNA Gene in Bacterial Genomes and Its Consequences for Bacterial Community Analyses

(2013) Tomáš Větrovský et al.   PLoS One

EMPeror: a tool for visualizing high-throughput microbial community data

(2013) Yoshiki Vázquez-Baeza et al.   GigaScience

Probiotic Mechanisms of Action

(2012) Miriam Bermudez-Brito et al.   ANNALS OF NUTRITION AND METABOLISM

Upper Respiratory Tract Microbial Communities, Acute Otitis Media Pathogens, and Antibiotic Use in Healthy and Sick Children

(2012) Melinda M. Pettigrew et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Nasopharyngeal Microbiota in Infants With Acute Otitis Media

(2012) Markus Hilty et al.   JOURNAL OF INFECTIOUS DISEASES

Structure, function and diversity of the healthy human microbiome

(2012)   NATURE

Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies

(2012) Anna Klindworth et al.   NUCLEIC ACIDS RESEARCH

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Evaluation of Methods for the Extraction and Purification of DNA from the Human Microbiome

(2012) Sanqing Yuan et al.   PLoS One

The Adult Cystic Fibrosis Airway Microbiota Is Stable over Time and Infection Type, and Highly Resilient to Antibiotic Treatment of Exacerbations

(2012) Anthony A. Fodor et al.   PLoS One

Inferring Correlation Networks from Genomic Survey Data

(2012) Jonathan Friedman et al.   PLoS Computational Biology

Targeted Restoration of the Intestinal Microbiota with a Simple, Defined Bacteriotherapy Resolves Relapsing Clostridium difficile Disease in Mice

(2012) Trevor D. Lawley et al.   PLoS Pathogens

Multi-species bacterial biofilm and intracellular infection in otitis media

(2011) Ruth B Thornton et al.   BMC Pediatrics

Human bocavirus in the nasopharynx of otitis-prone children

(2011) Liisa Lehtoranta et al.   INTERNATIONAL JOURNAL OF PEDIATRIC OTORHINOLARYNGOLOGY

High detection rates of nucleic acids of a wide range of respiratory viruses in the nasopharynx and the middle ear of children with a history of recurrent acute otitis media

(2011) Selma P. Wiertsema et al.   JOURNAL OF MEDICAL VIROLOGY

Variability and Diversity of Nasopharyngeal Microbiota in Children: A Metagenomic Analysis

(2011) Debby Bogaert et al.   PLoS One

Fast Identification and Removal of Sequence Contamination from Genomic and Metagenomic Datasets

(2011) Robert Schmieder et al.   PLoS One

Predominance of nontypeable Haemophilus influenzae in children with otitis media following introduction of a 3+0 pneumococcal conjugate vaccine schedule

(2011) Selma P. Wiertsema et al.   VACCINE

The appropriate medical management of methicillin-resistant Staphylococcus aureus in chronic suppurative otitis media

(2010) Hyeog Gi Choi et al.   ACTA OTO-LARYNGOLOGICA

Diversity of 16S rRNA Genes within Individual Prokaryotic Genomes

(2010) A. Y. Pei et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Molecular analysis of the diversity of vaginal microbiota associated with bacterial vaginosis

(2010) Xin Z Ling et al.   BMC GENOMICS

Bifidobacterium animalis subsp. lactis BB-12 in reducing the risk of infections in infancy

(2010) Teemu Taipale et al.   BRITISH JOURNAL OF NUTRITION

Relationship between cystic fibrosis respiratory tract bacterial communities and age, genotype, antibiotics and Pseudomonas aeruginosa

(2010) Vanja Klepac-Ceraj et al.   ENVIRONMENTAL MICROBIOLOGY

Staphylococcus epidermidis Esp inhibits Staphylococcus aureus biofilm formation and nasal colonization

(2010) Tadayuki Iwase et al.   NATURE

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Simultaneous Assay for Four Bacterial Species Including Alloiococcus otitidis Using Multiplex-PCR in Children With Culture Negative Acute Otitis Media

(2010) Ravinder Kaur et al.   PEDIATRIC INFECTIOUS DISEASE JOURNAL

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

(2010) Morgan N. Price et al.   PLoS One

Incomplete recovery and individualized responses of the human distal gut microbiota to repeated antibiotic perturbation

(2010) L. Dethlefsen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

PyNAST: a flexible tool for aligning sequences to a template alignment

(2009) J. G. Caporaso et al.   BIOINFORMATICS

Effect of Long-Term Consumption of Milk Supplemented with Probiotic Lactobacilli and Fluoride on Dental Caries and General Health in Preschool Children: A Cluster-Randomized Study

(2009) C. Stecksén-Blicks et al.   CARIES RESEARCH

Microbiology of the middle ear fluid in Costa Rican children between 2002 and 2007

(2009) Lara Aguilar et al.   INTERNATIONAL JOURNAL OF PEDIATRIC OTORHINOLARYNGOLOGY

Is the Healthy Middle Ear a Normally Sterile Site?

(2009) Brian D. Westerberg et al.   OTOLOGY & NEUROTOLOGY

An Economical Tandem Multiplex Real-Time PCR Technique for the Detection of a Comprehensive Range of Respiratory Pathogens

(2009) Glenys Chidlow et al.   Viruses-Basel

Cost of treating otitis media in Australia

(2009) Penelope S Taylor et al.   Expert Review of Pharmacoeconomics & Outcomes Research

Alloiococcus otitidis-otitis media pathogen or normal bacterial flora? 

(2008) KRISTER TANO et al.   APMIS

Diversity of Human Vaginal Bacterial Communities and Associations with Clinically Defined Bacterial Vaginosis

(2008) B. B. Oakley et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Spray bacteriotherapy decreases middle ear fluid in children with secretory otitis media

(2008) S Skovbjerg et al.   ARCHIVES OF DISEASE IN CHILDHOOD

Specific probiotics in reducing the risk of acute infections in infancy – a randomised, double-blind, placebo-controlled study

(2008) Samuli Rautava et al.   BRITISH JOURNAL OF NUTRITION

Viral Upper Respiratory Tract Infection and Otitis Media Complication in Young Children

(2008) T. Chonmaitree et al.   CLINICAL INFECTIOUS DISEASES

Decreased Diversity of the Fecal Microbiome in RecurrentClostridium difficile–Associated Diarrhea

(2008) Ju Young Chang et al.   JOURNAL OF INFECTIOUS DISEASES