A novel post hoc method for detecting index switching finds no evidence for increased switching on the Illumina HiSeq X

Deciphering the genomic architecture of the stickleback brain with a novel multilocus gene-mapping approach

(2017) Zitong Li et al.   MOLECULAR ECOLOGY

The sunflower genome provides insights into oil metabolism, flowering and Asterid evolution

(2017) Hélène Badouin et al.   NATURE

Population genomic scans suggest novel genes underlie convergent flowering time evolution in the introduced range ofArabidopsis thaliana

(2016) Billie A. Gould et al.   MOLECULAR ECOLOGY

Genome, transcriptome and methylome sequencing of a primitively eusocial wasp reveal a greatly reduced DNA methylation system in a social insect

(2016) Daniel S. Standage et al.   MOLECULAR ECOLOGY

Correcting for Sample Contamination in Genotype Calling of DNA Sequence Data

(2015) Matthew Flickinger et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Rapid and Inexpensive Whole-Genome Genotyping-by-Sequencing for Crossover Localization and Fine-Scale Genetic Mapping

(2015) Beth A. Rowan et al.   G3-Genes Genomes Genetics

Toward better understanding of artifacts in variant calling from high-coverage samples

(2014) Heng Li   BIOINFORMATICS

Consequences of Normalizing Transcriptomic and Genomic Libraries of Plant Genomes Using a Duplex-Specific Nuclease and Tetramethylammonium Chloride

(2013) Marta Matvienko et al.   PLoS One

Detecting and Estimating Contamination of Human DNA Samples in Sequencing and Array-Based Genotype Data

(2012) Goo Jun et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Cost-effective, high-throughput DNA sequencing libraries for multiplexed target capture

(2012) N. Rohland et al.   GENOME RESEARCH

Population genomics based on low coverage sequencing: how low should we go?

(2012) C. Alex Buerkle et al.   MOLECULAR ECOLOGY

The sunflower (Helianthus annuusL.) genome reflects a recent history of biased accumulation of transposable elements

(2012) S. Evan Staton et al.   PLANT JOURNAL

Fast and accurate long-read alignment with Burrows–Wheeler transform

(2010) Heng Li et al.   BIOINFORMATICS

Normalization of genomic DNA using duplex-specific nuclease

(2010) Irina Shagina et al.   BIOTECHNIQUES

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS