Identifying genome-wide immune gene variation underlying infectious disease in wildlife populations – a next generation sequencing approach in the gopher tortoise

History and recent progress on chytridiomycosis in amphibians

(2016) Lee Berger et al.   Fungal Ecology

Targeted capture enrichment and sequencing identifies extensive nucleotide variation in the turkey MHC-B

(2016) Kent M Reed et al.   IMMUNOGENETICS

Population genetic inferences using immune gene SNPs mirror patterns inferred by microsatellites

(2016) Jean P. Elbers et al.   Molecular Ecology Resources

SNP discovery in candidate adaptive genes using exon capture in a free-ranging alpine ungulate

(2016) Gretchen H. Roffler et al.   Molecular Ecology Resources

Targeted capture and resequencing of 1040 genes reveal environmentally driven functional variation in grey wolves

(2015) Rena M. Schweizer et al.   MOLECULAR ECOLOGY

Lack of genetic diversity across diverse immune genes in an endangered mammal, the Tasmanian devil (Sarcophilus harrisii)

(2015) Katrina M. Morris et al.   MOLECULAR ECOLOGY

IFI44 suppresses HIV-1 LTR promoter activity and facilitates its latency

(2015) Derek Power et al.   VIROLOGY

GO2TR: a gene ontology-based workflow to generate target regions for target enrichment experiments

(2015) Jean P. Elbers et al.   Conservation Genetics Resources

Detection and Validation of QTL Affecting Bacterial Cold Water Disease Resistance in Rainbow Trout Using Restriction-Site Associated DNA Sequencing

(2015) Yniv Palti et al.   PLoS One

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Balancing Selection Is the Main Force Shaping the Evolution of Innate Immunity Genes

(2014) A. Ferrer-Admetlla et al.   JOURNAL OF IMMUNOLOGY

SURVEILLANCE FOR UPPER RESPIRATORY TRACT DISEASE AND MYCOPLASMA IN FREE-RANGING GOPHER TORTOISES (GOPHERUS POLYPHEMUS) IN GEORGIA, USA

(2014) Jessica L. McGuire et al.   JOURNAL OF WILDLIFE DISEASES

White-nose syndrome is likely to extirpate the endangered Indiana bat over large parts of its range

(2013) Wayne E. Thogmartin et al.   BIOLOGICAL CONSERVATION

RANAVIRUS INFECTION OF FREE-RANGING AND CAPTIVE BOX TURTLES AND TORTOISES IN THE UNITED STATES

(2013) April J. Johnson et al.   JOURNAL OF WILDLIFE DISEASES

Reversible epigenetic down-regulation of MHC molecules by devil facial tumour disease illustrates immune escape by a contagious cancer

(2013) H. V. Siddle et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The western painted turtle genome, a model for the evolution of extreme physiological adaptations in a slowly evolving lineage

(2013) H Bradley Shaffer et al.   GENOME BIOLOGY

Population genetic structure of a threatened tortoise across the south-eastern United States: implications for conservation management

(2012) R. W. Clostio et al.   ANIMAL CONSERVATION

Genome-wide association study (GWAS) of resistance to head smut in maize

(2012) Ming Wang et al.   PLANT SCIENCE

Genome-Wide Association Studies Reveal a Simple Genetic Basis of Resistance to Naturally Coevolving Viruses in Drosophila melanogaster

(2012) Michael M. Magwire et al.   PLoS Genetics

IFIT1 is an antiviral protein that recognizes 5′-triphosphate RNA

(2011) Andreas Pichlmair et al.   NATURE IMMUNOLOGY

SNPeffect 4.0: on-line prediction of molecular and structural effects of protein-coding variants

(2011) G. De Baets et al.   NUCLEIC ACIDS RESEARCH

MHC genotypes associate with resistance to a frog-killing fungus

(2011) A. E. Savage et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Viruses Infecting Reptiles

(2011) Rachel E. Marschang   Viruses-Basel

STRUCTURE HARVESTER: a website and program for visualizing STRUCTURE output and implementing the Evanno method

(2011) Dent A. Earl et al.   Conservation Genetics Resources

ROADTRIPS: Case-Control Association Testing with Partially or Completely Unknown Population and Pedigree Structure

(2010) Timothy Thornton et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Social behavior drives the dynamics of respiratory disease in threatened tortoises

(2010) Lori D. Wendland et al.   ECOLOGY

Genetic Variation in IL28B Is Associated With Chronic Hepatitis C and Treatment Failure: A Genome-Wide Association Study

(2010) Andri Rauch et al.   GASTROENTEROLOGY

Stampy: A statistical algorithm for sensitive and fast mapping of Illumina sequence reads

(2010) G. Lunter et al.   GENOME RESEARCH

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

NK Cells Interfere with the Generation of Resistance against Mycoplasma Respiratory Infection following Nasal-Pulmonary Immunization

(2009) S. Bodhankar et al.   JOURNAL OF IMMUNOLOGY

Designing Genome-Wide Association Studies: Sample Size, Power, Imputation, and the Choice of Genotyping Chip

(2009) Chris C. A. Spencer et al.   PLoS Genetics

A Genome-Scan Method to Identify Selected Loci Appropriate for Both Dominant and Codominant Markers: A Bayesian Perspective

(2008) M. Foll et al.   GENETICS