SNP discovery in candidate adaptive genes using exon capture in a free-ranging alpine ungulate

High-throughput SNP genotyping of historical and modern samples of five bird species via sequence capture of ultraconserved elements

(2016) Haw Chuan Lim et al.   Molecular Ecology Resources

Harnessing cross-species alignment to discover SNPs and generate a draft genome sequence of a bighorn sheep (Ovis canadensis)

(2015) Joshua M Miller et al.   BMC GENOMICS

Whole-genome resequencing uncovers molecular signatures of natural and sexual selection in wild bighorn sheep

(2015) Marty Kardos et al.   MOLECULAR ECOLOGY

Sequence capture of ultraconserved elements from bird museum specimens

(2015) John E. McCormack et al.   Molecular Ecology Resources

Genomics and the challenging translation into conservation practice

(2015) Aaron B.A. Shafer et al.   TRENDS IN ECOLOGY & EVOLUTION

Lack of sex-biased dispersal promotes fine-scale genetic structure in alpine ungulates

(2014) Gretchen H. Roffler et al.   CONSERVATION GENETICS

Using genomics to characterize evolutionary potential for conservation of wild populations

(2014) Katherine A. Harrisson et al.   Evolutionary Applications

A field guide to whole-genome sequencing, assembly and annotation

(2014) Robert Ekblom et al.   Evolutionary Applications

Testing for Hardy–Weinberg Proportions: Have We Lost the Plot?

(2014) Robin S. Waples   JOURNAL OF HEREDITY

Adaptations to Climate-Mediated Selective Pressures in Sheep

(2014) Feng-Hua Lv et al.   MOLECULAR BIOLOGY AND EVOLUTION

Evaluation of demographic history and neutral parameterization on the performance ofFSToutlier tests

(2014) Katie E. Lotterhos et al.   MOLECULAR ECOLOGY

A single-nucleotide polymorphism-based approach for rapid and cost-effective genetic wolf monitoring in Europe based on noninvasively collected samples

(2014) Robert H. S. Kraus et al.   Molecular Ecology Resources

SNPs for Parentage Testing and Traceability in Globally Diverse Breeds of Sheep

(2014) Michael P. Heaton et al.   PLoS One

EPIDEMIC PASTEURELLOSIS IN A BIGHORN SHEEP POPULATION COINCIDING WITH THE APPEARANCE OF A DOMESTIC SHEEP

(2013) Janet L. George et al.   JOURNAL OF WILDLIFE DISEASES

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

Unlocking the vault: next-generation museum population genomics

(2013) Ke Bi et al.   MOLECULAR ECOLOGY

Life history trade-offs at a single locus maintain sexually selected genetic variation

(2013) Susan E. Johnston et al.   NATURE

Putting the landscape into the genomics of trees: approaches for understanding local adaptation and population responses to changing climate

(2013) V. L. Sork et al.   Tree Genetics & Genomes

Genome sequencing and population genomics in non-model organisms

(2013) Hans Ellegren   TRENDS IN ECOLOGY & EVOLUTION

Adaptive Genetic Variation on the Landscape: Methods and Cases

(2012) Sean D. Schoville et al.   Annual Review of Ecology Evolution and Systematics

Genetic testing for phenotype-causing variants in sheep and goats

(2012) Gesine Lühken   MOLECULAR AND CELLULAR PROBES

Environmental selection on transcriptome-derived SNPs in a high gene flow marine fish, the Atlantic herring (Clupea harengus)

(2012) MORTEN T. LIMBORG et al.   MOLECULAR ECOLOGY

RobiNA: a user-friendly, integrated software solution for RNA-Seq-based transcriptomics

(2012) M. Lohse et al.   NUCLEIC ACIDS RESEARCH

Genome-Wide Analysis of the World's Sheep Breeds Reveals High Levels of Historic Mixture and Strong Recent Selection

(2012) James W. Kijas et al.   PLOS BIOLOGY

Exome-wide DNA capture and next generation sequencing in domestic and wild species

(2011) Ted Cosart et al.   BMC GENOMICS

High connectivity among argali sheep from Afghanistan and adjacent countries: Inferences from neutral and candidate gene microsatellites

(2011) G. Luikart et al.   CONSERVATION GENETICS

QTL mapping for sexually dimorphic fitness-related traits in wild bighorn sheep

(2011) J Poissant et al.   HEREDITY

Genome-wide association mapping identifies the genetic basis of discrete and quantitative variation in sexual weaponry in a wild sheep population

(2011) SUSAN E. JOHNSTON et al.   MOLECULAR ECOLOGY

Comparison ofFSToutlier tests for SNP loci under selection

(2011) SHAWN R. NARUM et al.   Molecular Ecology Resources

Next-generation RAD sequencing identifies thousands of SNPs for assessing hybridization between rainbow and westslope cutthroat trout

(2011) PAUL A. HOHENLOHE et al.   Molecular Ecology Resources

The sheep genome reference sequence: a work in progress

(2010) et al.   ANIMAL GENETICS

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS

Comparing three different methods to detect selective loci using dominant markers

(2010) A. PÉREZ-FIGUEROA et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Adaptation of redband trout in desert and montane environments

(2010) SHAWN R. NARUM et al.   MOLECULAR ECOLOGY

Perspectives on the use of landscape genetics to detect genetic adaptive variation in the field

(2010) STÉPHANIE MANEL et al.   MOLECULAR ECOLOGY

Genomic-scale capture and sequencing of endogenous DNA from feces

(2010) GEORGE H. PERRY et al.   MOLECULAR ECOLOGY

Back to nature: ecological genomics of loblolly pine (Pinus taeda, Pinaceae)

(2010) ANDREW J. ECKERT et al.   MOLECULAR ECOLOGY

A genome-wide set of SNPs detects population substructure and long range linkage disequilibrium in wild sheep

(2010) J.M. MILLER et al.   Molecular Ecology Resources

Genomics and the future of conservation genetics

(2010) Fred W. Allendorf et al.   NATURE REVIEWS GENETICS

Trans-Species Polymorphism and Selection in the MHC Class II DRA Genes of Domestic Sheep

(2010) Keith T. Ballingall et al.   PLoS One

Adaptation genomics: the next generation

(2010) Jessica Stapley et al.   TRENDS IN ECOLOGY & EVOLUTION

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Landscape genomics and biased FST approaches reveal single nucleotide polymorphisms under selection in goat breeds of North-East Mediterranean

(2009) Lorraine Pariset et al.   BMC GENETICS

Variable expression of cysteinyl leukotriene type I receptor splice variants in asthmatic females with different promoter haplotypes

(2009) Milena Sokolowska et al.   BMC IMMUNOLOGY

Population genomics of marine fishes: identifying adaptive variation in space and time

(2009) EINAR E. NIELSEN et al.   MOLECULAR ECOLOGY

Advancing ecological understandings through technological transformations in noninvasive genetics

(2009) ALBANO BEJA-PEREIRA et al.   Molecular Ecology Resources

A Genome Wide Survey of SNP Variation Reveals the Genetic Structure of Sheep Breeds

(2009) James W. Kijas et al.   PLoS One

The Genome Sequence of Taurine Cattle: A Window to Ruminant Biology and Evolution

(2009) et al.   SCIENCE

Landscape Genetics

(2008) Rolf Holderegger et al.   BIOSCIENCE

LOSITAN: A workbench to detect molecular adaptation based on a Fst-outlier method

(2008) Tiago Antao et al.   BMC BIOINFORMATICS

Quantitative PCR assessment of microsatellite and SNP genotyping with variable quality DNA extracts

(2008) Nathan R. Campbell et al.   CONSERVATION GENETICS

Gene mapping in the wild with SNPs: guidelines and future directions

(2008) Jon Slate et al.   GENETICA

A Genome-Scan Method to Identify Selected Loci Appropriate for Both Dominant and Codominant Markers: A Bayesian Perspective

(2008) M. Foll et al.   GENETICS

A critical analysis of production-associated DNA polymorphisms in the genes of cattle, goat, sheep, and pig

(2008) Eveline M. Ibeagha-Awemu et al.   MAMMALIAN GENOME