Improving eukaryotic genome annotation using single molecule mRNA sequencing

A method for near full-length amplification and sequencing for six hepatitis C virus genotypes

(2016) Rowena A. Bull et al.   BMC GENOMICS

Photorhabdus-nematode symbiosis is dependent onhfq-mediated regulation of secondary metabolites

(2016) Nicholas J. Tobias et al.   ENVIRONMENTAL MICROBIOLOGY

Dictyocaulus viviparus genome, variome and transcriptome elucidate lungworm biology and support future intervention

(2016) Samantha N. McNulty et al.   Scientific Reports

Cracking the nodule worm code advances knowledge of parasite biology and biotechnology to tackle major diseases of livestock

(2015) Rahul Tyagi et al.   BIOTECHNOLOGY ADVANCES

StringTie enables improved reconstruction of a transcriptome from RNA-seq reads

(2015) Mihaela Pertea et al.   NATURE BIOTECHNOLOGY

The genome and transcriptome of the zoonotic hookworm Ancylostoma ceylanicum identify infection-specific gene families

(2015) Erich M Schwarz et al.   NATURE GENETICS

Role of Secondary Metabolites in Establishment of the Mutualistic Partnership between Xenorhabdus nematophila and the Entomopathogenic Nematode Steinernema carpocapsae

(2014) Swati Singh et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

HTSeq--a Python framework to work with high-throughput sequencing data

(2014) S. Anders et al.   BIOINFORMATICS

Genome of the human hookworm Necator americanus

(2014) Yat T Tang et al.   NATURE GENETICS

Helminth.net: expansions to Nematode.net and an introduction to Trematode.net

(2014) John Martin et al.   NUCLEIC ACIDS RESEARCH

CDD: NCBI's conserved domain database

(2014) Aron Marchler-Bauer et al.   NUCLEIC ACIDS RESEARCH

Pfam: the protein families database

(2013) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

Data, information, knowledge and principle: back to metabolism in KEGG

(2013) Minoru Kanehisa et al.   NUCLEIC ACIDS RESEARCH

An Extensive Comparison of the Effect of Anthelmintic Classes on Diverse Nematodes

(2013) Yan Hu et al.   PLoS One

Soil-Transmitted Helminthiasis in Laos: A Community-Wide Cross-Sectional Study of Humans and Dogs in a Mass Drug Administration Environment

(2012) James V. Conlan et al.   AMERICAN JOURNAL OF TROPICAL MEDICINE AND HYGIENE

Regulation of eukaryotic gene expression by the untranslated gene regions and other non-coding elements

(2012) Lucy W. Barrett et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

MAPK phosphorylation is implicated in the adaptation to desiccation stress in nematodes

(2012) M. C. Banton et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Epidemiological and Genetic Data Supporting the Transmission of Ancylostoma ceylanicum among Human and Domestic Animals

(2012) Romano Ngui et al.   PLoS Neglected Tropical Diseases

In vitro and in vivo efficacy of tribendimidine and its metabolites alone and in combination against the hookworms Heligmosomoides bakeri and Ancylostoma ceylanicum

(2011) Lucienne Tritten et al.   ACTA TROPICA

Incidence and Risk Factors of Hookworm Infection in a Rural Community of Central Thailand

(2011) Vittaya Jiraanankul et al.   AMERICAN JOURNAL OF TROPICAL MEDICINE AND HYGIENE

Ending the message: poly(A) signals then and now

(2011) N. J. Proudfoot   GENES & DEVELOPMENT

The draft genome of the parasitic nematode Trichinella spiralis

(2011) Makedonka Mitreva et al.   NATURE GENETICS

Characterizing Ancylostoma caninum transcriptome and exploring nematode parasitic adaptation

(2010) Zhengyuan Wang et al.   BMC GENOMICS

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

Molecular cloning and DNA binding characterization of DAF-16 orthologs from Ancylostoma hookworms

(2008) Xin Gao et al.   INTERNATIONAL JOURNAL FOR PARASITOLOGY

Assessing the gene space in draft genomes

(2008) Genis Parra et al.   NUCLEIC ACIDS RESEARCH

PCR-based coprodiagnostic tools reveal dogs as reservoirs of zoonotic ancylostomiasis caused by Ancylostoma ceylanicum in temple communities in Bangkok

(2008) Rebecca J. Traub et al.   VETERINARY PARASITOLOGY