Identification of novel loci associated with maturity and yield traits in early maturity soybean plant introduction lines

Mutations in DONSON disrupt replication fork stability and cause microcephalic dwarfism

(2017) John J Reynolds et al.   NATURE GENETICS

Natural variation at the soybean J locus improves adaptation to the tropics and enhances yield

(2017) Sijia Lu et al.   NATURE GENETICS

Genome-Wide Association Studies In Plant Pathosystems: Toward an Ecological Genomics Approach

(2017) Claudia Bartoli et al.   Frontiers in Plant Science

A recessive allele for delayed flowering at the soybean maturity locus E9 is a leaky allele of FT2a, a FLOWERING LOCUS T ortholog

(2016) Chen Zhao et al.   BMC PLANT BIOLOGY

Functional analysis of structurally related soybean GmWRKY58 and GmWRKY76 in plant growth and development

(2016) Yan Yang et al.   JOURNAL OF EXPERIMENTAL BOTANY

How far from the SNP may the causative genes be?

(2016) Aharon Brodie et al.   NUCLEIC ACIDS RESEARCH

Mapping and identification of a potential candidate gene for a novel maturity locus, E10, in soybean

(2016) Bahram Samanfar et al.   THEORETICAL AND APPLIED GENETICS

Addressing Population-Specific Multiple Testing Burdens in Genetic Association Studies

(2015) Rafal S. Sobota et al.   ANNALS OF HUMAN GENETICS

Sambamba: fast processing of NGS alignment formats

(2015) Artem Tarasov et al.   BIOINFORMATICS

Genome-wide association study for flowering time, maturity dates and plant height in early maturing soybean (Glycine max) germplasm

(2015) Jiaoping Zhang et al.   BMC GENOMICS

Scanning and Filling: Ultra-Dense SNP Genotyping Combining Genotyping-By-Sequencing, SNP Array and Whole-Genome Resequencing Data

(2015) Davoud Torkamaneh et al.   PLoS One

A New Dominant Gene Conditions Early Flowering and Maturity in Soybean

(2014) Fanjiang Kong et al.   CROP SCIENCE

fastSTRUCTURE: Variational Inference of Population Structure in Large SNP Data Sets

(2014) Anil Raj et al.   GENETICS

Identification of loci governing eight agronomic traits using a GBS-GWAS approach and validation by QTL mapping in soya bean

(2014) Humira Sonah et al.   PLANT BIOTECHNOLOGY JOURNAL

GmFT2a and GmFT5a Redundantly and Differentially Regulate Flowering through Interaction with and Upregulation of the bZIP Transcription Factor GmFDL19 in Soybean

(2014) Haiyang Nan et al.   PLoS One

Rapid Identification of Alleles at the Soybean Maturity Gene E3 using genotyping by Sequencing and a Haplotype-Based Approach

(2014) Aurélie Tardivel et al.   Plant Genome

Genome Wide Association Mapping of Resistance in Soybean with a Genotyping-by-Sequencing Approach

(2014) Maxime Bastien et al.   Plant Genome

Natural Variations and Genome-Wide Association Studies in Crop Plants

(2013) Xuehui Huang et al.   Annual Review of Plant Biology

Molecular footprints of domestication and improvement in soybean revealed by whole genome re-sequencing

(2013) Ying-hui Li et al.   BMC GENOMICS

Genetic and molecular bases of photoperiod responses of flowering in soybean

(2012) Satoshi Watanabe et al.   BREEDING SCIENCE

A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff

(2012) Pablo Cingolani et al.   FLY

Molecular identification of genes controlling flowering time, maturity, and photoperiod response in soybean

(2012) Zhengjun Xia et al.   PLANT SYSTEMATICS AND EVOLUTION

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data

(2011) H. Li   BIOINFORMATICS

A Map-Based Cloning Strategy Employing a Residual Heterozygous Line Reveals that theGIGANTEAGene Is Involved in Soybean Maturity and Flowering

(2011) Satoshi Watanabe et al.   GENETICS

The alleles at the E1 locus impact the expression pattern of two soybean FT-like genes shown to induce flowering in Arabidopsis

(2011) Dhiraj Thakare et al.   PLANTA

A Robust, Simple Genotyping-by-Sequencing (GBS) Approach for High Diversity Species

(2011) Robert J. Elshire et al.   PLoS One

GCTA: A Tool for Genome-wide Complex Trait Analysis

(2010) Jian Yang et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Auxin Biosynthesis and Its Role in Plant Development

(2010) Yunde Zhao   Annual Review of Plant Biology

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

Resequencing of 31 wild and cultivated soybean genomes identifies patterns of genetic diversity and selection

(2010) Hon-Ming Lam et al.   NATURE GENETICS

BRCC36A is epistatic to BRCA1 in DNA crosslink repair and homologous recombination in Arabidopsis thaliana

(2010) Astrid S. Block-Schmidt et al.   NUCLEIC ACIDS RESEARCH

A Unified Approach to Genotype Imputation and Haplotype-Phase Inference for Large Data Sets of Trios and Unrelated Individuals

(2009) Brian L. Browning et al.   AMERICAN JOURNAL OF HUMAN GENETICS

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Map-Based Cloning of the Gene Associated With the Soybean Maturity Locus E3

(2009) Satoshi Watanabe et al.   GENETICS

Circos: An information aesthetic for comparative genomics

(2009) M. Krzywinski et al.   GENOME RESEARCH

SoyBase, the USDA-ARS soybean genetics and genomics database

(2009) David Grant et al.   NUCLEIC ACIDS RESEARCH

Genetic Redundancy in Soybean Photoresponses Associated With Duplication of the Phytochrome A Gene

(2008) B. Liu et al.   GENETICS

The Nuclear Factor Y subunits NF-YB2 and NF-YB3 play additive roles in the promotion of flowering by inductive long-day photoperiods in Arabidopsis

(2008) Roderick W. Kumimoto et al.   PLANTA