Population size may shape the accumulation of functional mutations following domestication

Whole-Genome Sequencing of Native Sheep Provides Insights into Rapid Adaptations to Extreme Environments

(2016) Ji Yang et al.   MOLECULAR BIOLOGY AND EVOLUTION

Ensembl 2017

(2016) Bronwen L. Aken et al.   NUCLEIC ACIDS RESEARCH

Inferring Population Size History from Large Samples of Genome-Wide Molecular Data - An Approximate Bayesian Computation Approach

(2016) Simon Boitard et al.   PLoS Genetics

Worldwide patterns of genomic variation and admixture in gray wolves

(2015) Zhenxin Fan et al.   GENOME RESEARCH

Genomic Analyses Reveal Potential Independent Adaptation to High Altitude in Tibetan Chickens

(2015) Ming-Shan Wang et al.   MOLECULAR BIOLOGY AND EVOLUTION

The BioMart community portal: an innovative alternative to large, centralized data repositories

(2015) Damian Smedley et al.   NUCLEIC ACIDS RESEARCH

Core questions in domestication research

(2015) Melinda A. Zeder   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Domestication and the Mitochondrial Genome: Comparing Patterns and Rates of Molecular Evolution in Domesticated Mammals and Birds and Their Wild Relatives

(2014) Camile Moray et al.   Genome Biology and Evolution

Untangling the hybrid nature of modern pig genomes: a mosaic derived from biogeographically distinct and highly divergentSus scrofapopulations

(2014) Mirte Bosse et al.   MOLECULAR ECOLOGY

Establishing the validity of domestication genes using DNA from ancient chickens

(2014) L. Girdland Flink et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Prehistoric genomes reveal the genetic foundation and cost of horse domestication

(2014) Mikkel Schubert et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

gKaKs: the pipeline for genome-level Ka/Ks calculation

(2013) Chengjun Zhang et al.   BIOINFORMATICS

Molecular consequences of animal breeding

(2013) Leif Andersson   CURRENT OPINION IN GENETICS & DEVELOPMENT

Domestication Genomics: Evidence from Animals

(2013) Guo-Dong Wang et al.   Annual Review of Animal Biosciences

Genome sequencing reveals fine scale diversification and reticulation history during speciation in Sus

(2013) Laurent AF Frantz et al.   GENOME BIOLOGY

Generation length for mammals

(2013) Moreno Di Marco et al.   Nature Conservation-Bulgaria

Accumulation of slightly deleterious mutations in the mitochondrial genome: A hallmark of animal domestication

(2012) Austin L. Hughes   GENE

Analyses of pig genomes provide insight into porcine demography and evolution

(2012) Martien A. M. Groenen et al.   NATURE

Sequencing and automated whole-genome optical mapping of the genome of a domestic goat (Capra hircus)

(2012) Yang Dong et al.   NATURE BIOTECHNOLOGY

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

GigaDB: announcing the GigaScience database

(2012) Tam P Sneddon et al.   GigaScience

Inference of human population history from individual whole-genome sequences

(2011) Heng Li et al.   NATURE

Deciphering the genetic basis of animal domestication

(2011) P. Wiener et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Domestication Relaxed Selective Constraints on the Yak Mitochondrial Genome

(2010) Zhaofeng Wang et al.   MOLECULAR BIOLOGY AND EVOLUTION

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

A first-generation microsatellite-based genetic linkage map of the Siberian jay (Perisoreus infaustus): insights into avian genome evolution

(2009) Sonja Jaari et al.   BMC GENOMICS

Estimating Species Phylogenies Using Coalescence Times among Sequences

(2009) Liang Liu et al.   SYSTEMATIC BIOLOGY

Contrasting Mode of Evolution at a Coat Color Locus in Wild and Domestic Pigs

(2009) Meiying Fang et al.   PLoS Genetics

The Legacy of Domestication: Accumulation of Deleterious Mutations in the Dog Genome

(2008) F. Cruz et al.   MOLECULAR BIOLOGY AND EVOLUTION