Deep learning of mutation-gene-drug relations from the literature

HiPub: translating PubMed and PMC texts to networks for knowledge discovery

(2016) Kyubum Lee et al.   BIOINFORMATICS

HGVS Recommendations for the Description of Sequence Variants: 2016 Update

(2016) Johan T. den Dunnen et al.   HUMAN MUTATION

Text mining for precision medicine: automating disease-mutation relationship extraction from biomedical literature

(2016) Ayush Singhal et al.   JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION

Phase II Pilot Study of Vemurafenib in Patients With Metastatic BRAF-Mutated Colorectal Cancer

(2015) Scott Kopetz et al.   JOURNAL OF CLINICAL ONCOLOGY

Correlating chemical sensitivity and basal gene expression reveals mechanism of action

(2015) Matthew G Rees et al.   Nature Chemical Biology

ClinVar: public archive of interpretations of clinically relevant variants

(2015) Melissa J. Landrum et al.   NUCLEIC ACIDS RESEARCH

tmChem: a high performance approach for chemical named entity recognition and normalization

(2015) Robert Leaman et al.   Journal of Cheminformatics

COSMIC: exploring the world's knowledge of somatic mutations in human cancer

(2014) Simon A. Forbes et al.   NUCLEIC ACIDS RESEARCH

Hybrid curation of gene–mutation relations combining automated extraction and crowdsourcing

(2014) John D. Burger et al.   Database-The Journal of Biological Databases and Curation

tmVar: a text mining approach for extracting sequence variants in biomedical literature

(2013) C.-H. Wei et al.   BIOINFORMATICS

DrugBank 4.0: shedding new light on drug metabolism

(2013) Vivian Law et al.   NUCLEIC ACIDS RESEARCH

ChemSpot: a hybrid system for chemical named entity recognition

(2012) Tim Rocktäschel et al.   BIOINFORMATICS

Pharmacogenomics Knowledge for Personalized Medicine

(2012) M Whirl-Carrillo et al.   CLINICAL PHARMACOLOGY & THERAPEUTICS

A SNPshot of PubMed to associate genetic variants with drugs, diseases, and adverse reactions

(2012) Jörg Hakenberg et al.   JOURNAL OF BIOMEDICAL INFORMATICS

The Cancer Cell Line Encyclopedia enables predictive modelling of anticancer drug sensitivity

(2012) Jordi Barretina et al.   NATURE

Improved Survival with Vemurafenib in Melanoma with BRAF V600E Mutation

(2011) Paul B. Chapman et al.   NEW ENGLAND JOURNAL OF MEDICINE

Toward an automatic method for extracting cancer- and other disease-related point mutations from the biomedical literature

(2010) Emily Doughty et al.   BIOINFORMATICS

PolySearch: a web-based text mining system for extracting relationships between human diseases, genes, mutations, drugs and metabolites

(2008) D. Cheng et al.   NUCLEIC ACIDS RESEARCH