H2 drives metabolic rearrangements in gas-fermenting Clostridium autoethanogenum

A study of CO/syngas bioconversion by Clostridium autoethanogenum with a flexible gas-cultivation system

(2017) Huijuan Xu et al.   ENZYME AND MICROBIAL TECHNOLOGY

Optimization of Acquisition and Data-Processing Parameters for Improved Proteomic Quantification by Sequential Window Acquisition of All Theoretical Fragment Ion Mass Spectrometry

(2017) Shanshan Li et al.   JOURNAL OF PROTEOME RESEARCH

Metabolic engineering of Clostridium autoethanogenum for selective alcohol production

(2017) Fungmin Liew et al.   METABOLIC ENGINEERING

Arginine deiminase pathway provides ATP and boosts growth of the gas-fermenting acetogen Clostridium autoethanogenum

(2017) Kaspar Valgepea et al.   METABOLIC ENGINEERING

Industrial biomanufacturing: The future of chemical production

(2017) James M. Clomburg et al.   SCIENCE

Maintenance of ATP Homeostasis Triggers Metabolic Shifts in Gas-Fermenting Acetogens

(2017) Kaspar Valgepea et al.   Cell Systems

Carbon recovery by fermentation of CO-rich off gases – Turning steel mills into biorefineries

(2016) Bastian Molitor et al.   BIORESOURCE TECHNOLOGY

Production of medium-chain fatty acids and higher alcohols by a synthetic co-culture grown on carbon monoxide or syngas

(2016) Martijn Diender et al.   Biotechnology for Biofuels

Ethanol production in syngas-fermenting Clostridium ljungdahlii is controlled by thermodynamics rather than by enzyme expression

(2016) H. Richter et al.   Energy & Environmental Science

Impact of cyclic pH shifts on carbon monoxide fermentation to ethanol by Clostridium autoethanogenum

(2016) Haris Nalakath Abubackar et al.   FUEL

Low carbon fuels and commodity chemicals from waste gases – systematic approach to understand energy metabolism in a model acetogen

(2016) Esteban Marcellin et al.   GREEN CHEMISTRY

High-throughput production of a stable isotope-labeled peptide library for targeted proteomics using a wheat germ cell-free synthesis system

(2016) Nobuaki Takemori et al.   Molecular BioSystems

A multicenter study benchmarks software tools for label-free proteome quantification

(2016) Pedro Navarro et al.   NATURE BIOTECHNOLOGY

Harnessing the power of microbial autotrophy

(2016) Nico J. Claassens et al.   NATURE REVIEWS MICROBIOLOGY

Insights into CO 2 Fixation Pathway of Clostridium autoethanogenum by Targeted Mutagenesis

(2016) Fungmin Liew et al.   mBio

CO2 fixation by anaerobic non-photosynthetic mixotrophy for improved carbon conversion

(2016) Shawn W. Jones et al.   Nature Communications

CRISPR/Cas9-Based Efficient Genome Editing in Clostridium ljungdahlii, an Autotrophic Gas-Fermenting Bacterium

(2016) He Huang et al.   ACS Synthetic Biology

Gas Fermentation—A Flexible Platform for Commercial Scale Production of Low-Carbon-Fuels and Chemicals from Waste and Renewable Feedstocks

(2016) FungMin Liew et al.   Frontiers in Microbiology

Occurrence of ferredoxin:NAD+oxidoreductase activity and its ion specificity in several Gram-positive and Gram-negative bacteria

(2016) Verena Hess et al.   PeerJ

CO Metabolism in the Acetogen Acetobacterium woodii

(2015) Johannes Bertsch et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Carbon monoxide fermentation to ethanol by Clostridium autoethanogenum in a bioreactor with no accumulation of acetic acid

(2015) Haris Nalakath Abubackar et al.   BIORESOURCE TECHNOLOGY

Traits of selectedClostridiumstrains for syngas fermentation to ethanol

(2015) Michael E. Martin et al.   BIOTECHNOLOGY AND BIOENGINEERING

Bioenergetic constraints for conversion of syngas to biofuels in acetogenic bacteria

(2015) Johannes Bertsch et al.   Biotechnology for Biofuels

Using Genome-scale Models to Predict Biological Capabilities

(2015) Edward J. O’Brien et al.   CELL

Absolute Proteome Composition and Dynamics during Dormancy and Resuscitation of Mycobacterium tuberculosis

(2015) Olga T. Schubert et al.   Cell Host & Microbe

Chaotropicity: a key factor in product tolerance of biofuel-producing microorganisms

(2015) Jonathan A Cray et al.   CURRENT OPINION IN BIOTECHNOLOGY

C1-carbon sources for chemical and fuel production by microbial gas fermentation

(2015) Peter Dürre et al.   CURRENT OPINION IN BIOTECHNOLOGY

Energy Conservation Associated with Ethanol Formation from H2and CO2in Clostridium autoethanogenum Involving Electron Bifurcation

(2015) Johanna Mock et al.   JOURNAL OF BACTERIOLOGY

Advanced continuous cultivation methods for systems microbiology

(2015) Kaarel Adamberg et al.   MICROBIOLOGY-SGM

High-throughput synthesis of stable isotope-labeled transmembrane proteins for targeted transmembrane proteomics using a wheat germ cell-free protein synthesis system

(2015) Nobuaki Takemori et al.   Molecular BioSystems

MSstats: an R package for statistical analysis of quantitative mass spectrometry-based proteomic experiments

(2014) Meena Choi et al.   BIOINFORMATICS

Comparison of single-molecule sequencing and hybrid approaches for finishing the genome of Clostridium autoethanogenum and analysis of CRISPR systems in industrial relevant Clostridia

(2014) Steven D Brown et al.   Biotechnology for Biofuels

Normalyzer: A Tool for Rapid Evaluation of Normalization Methods for Omics Data Sets

(2014) Aakash Chawade et al.   JOURNAL OF PROTEOME RESEARCH

Autotrophy at the thermodynamic limit of life: a model for energy conservation in acetogenic bacteria

(2014) Kai Schuchmann et al.   NATURE REVIEWS MICROBIOLOGY

A Two-Stage Continuous Fermentation System for Conversion of Syngas into Ethanol

(2013) Hanno Richter et al.   Energies

NADP-Specific Electron-Bifurcating [FeFe]-Hydrogenase in a Functional Complex with Formate Dehydrogenase in Clostridium autoethanogenum Grown on CO

(2013) S. Wang et al.   JOURNAL OF BACTERIOLOGY

Characterizing acetogenic metabolism using a genome-scale metabolic reconstruction of Clostridium ljungdahlii

(2013) Harish Nagarajan et al.   Microbial Cell Factories

Commercial Biomass Syngas Fermentation

(2012) James Daniell et al.   Energies

The Proteomics Identifications (PRIDE) database and associated tools: status in 2013

(2012) Juan Antonio Vizcaíno et al.   NUCLEIC ACIDS RESEARCH

Stoichiometric and energetic analyses of non-photosynthetic CO2-fixation pathways to support synthetic biology strategies for production of fuels and chemicals

(2012) Alan G Fast et al.   Current Opinion in Chemical Engineering

2,3-Butanediol Production by Acetogenic Bacteria, an Alternative Route to Chemical Synthesis, Using Industrial Waste Gas

(2011) Michael Köpke et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Metabolome Remodeling during the Acidogenic-Solventogenic Transition in Clostridium acetobutylicum

(2011) Daniel Amador-Noguez et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Fermentative production of ethanol from syngas using novel moderately alkaliphilic strains of Alkalibaculum bacchi

(2011) Kan Liu et al.   BIORESOURCE TECHNOLOGY

Microbial production of ethanol from carbon monoxide

(2011) Mark R Wilkins et al.   CURRENT OPINION IN BIOTECHNOLOGY

mProphet: automated data processing and statistical validation for large-scale SRM experiments

(2011) Lukas Reiter et al.   NATURE METHODS

Alternative Pathways of Carbon Dioxide Fixation: Insights into the Early Evolution of Life?

(2010) Georg Fuchs   Annual Review of Microbiology

Skyline: an open source document editor for creating and analyzing targeted proteomics experiments

(2010) Brendan MacLean et al.   BIOINFORMATICS

Syngas fermentation to biofuel: Evaluation of carbon monoxide mass transfer coefficient (kLa) in different reactor configurations

(2010) Pradeep Chaminda Munasinghe et al.   BIOTECHNOLOGY PROGRESS

What is flux balance analysis?

(2010) Jeffrey D Orth et al.   NATURE BIOTECHNOLOGY

Universal sample preparation method for proteome analysis

(2009) Jacek R Wiśniewski et al.   NATURE METHODS

Acetogenesis and the Wood–Ljungdahl pathway of CO2 fixation

(2008) Stephen W. Ragsdale et al.   BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS