Low carbon fuels and commodity chemicals from waste gases – systematic approach to understand energy metabolism in a model acetogen

Traits of selectedClostridiumstrains for syngas fermentation to ethanol

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Acetogenic mixotrophy: novel options for yield improvement in biofuels and biochemicals production

(2015) Alan G Fast et al.   CURRENT OPINION IN BIOTECHNOLOGY

Sustainability of biofuels and renewable chemicals production from biomass

(2015) Manfred Kircher   CURRENT OPINION IN CHEMICAL BIOLOGY

Energy Conservation Associated with Ethanol Formation from H2and CO2in Clostridium autoethanogenum Involving Electron Bifurcation

(2015) Johanna Mock et al.   JOURNAL OF BACTERIOLOGY

High-Antibody-Producing Chinese Hamster Ovary Cells Up-Regulate Intracellular Protein Transport and Glutathione Synthesis

(2015) Camila A. Orellana et al.   JOURNAL OF PROTEOME RESEARCH

Ethanol and Acetic Acid Production from Carbon Monoxide in a Clostridium Strain in Batch and Continuous Gas-Fed Bioreactors

(2015) Haris Abubackar et al.   International Journal of Environmental Research and Public Health

Sequence data for Clostridium autoethanogenum using three generations of sequencing technologies

(2015) Sagar M Utturkar et al.   Scientific Data

Reconstruction of an Acetogenic 2,3-Butanediol Pathway Involving a Novel NADPH-Dependent Primary-Secondary Alcohol Dehydrogenase

(2014) Michael Köpke et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Comparison of single-molecule sequencing and hybrid approaches for finishing the genome of Clostridium autoethanogenum and analysis of CRISPR systems in industrial relevant Clostridia

(2014) Steven D Brown et al.   Biotechnology for Biofuels

Trash to treasure: production of biofuels and commodity chemicals via syngas fermenting microorganisms

(2014) Haythem Latif et al.   CURRENT OPINION IN BIOTECHNOLOGY

Evidence for a Hexaheteromeric Methylenetetrahydrofolate Reductase in Moorella thermoacetica

(2014) J. Mock et al.   JOURNAL OF BACTERIOLOGY

Reducing Recon 2 for steady-state flux analysis of HEK cell culture

(2014) Lake-Ee Quek et al.   JOURNAL OF BIOTECHNOLOGY

Persistent growth of CO2 emissions and implications for reaching climate targets

(2014) P. Friedlingstein et al.   Nature Geoscience

Autotrophy at the thermodynamic limit of life: a model for energy conservation in acetogenic bacteria

(2014) Kai Schuchmann et al.   NATURE REVIEWS MICROBIOLOGY

Single gene insertion drives bioalcohol production by a thermophilic archaeon

(2014) Mirko Basen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Saccharopolyspora erythraea’s genome is organised in high-order transcriptional regions mediated by targeted degradation at the metabolic switch

(2013) Esteban Marcellin et al.   BMC GENOMICS

NADP-Specific Electron-Bifurcating [FeFe]-Hydrogenase in a Functional Complex with Formate Dehydrogenase in Clostridium autoethanogenum Grown on CO

(2013) S. Wang et al.   JOURNAL OF BACTERIOLOGY

Characterizing acetogenic metabolism using a genome-scale metabolic reconstruction of Clostridium ljungdahlii

(2013) Harish Nagarajan et al.   Microbial Cell Factories

RNA-seq-based comparative transcriptome analysis of the syngas-utilizing bacterium Clostridium ljungdahlii DSM 13528 grown autotrophically and heterotrophically

(2013) Yang Tan et al.   Molecular BioSystems

Clostridium difficile Is an Autotrophic Bacterial Pathogen

(2013) Michael Köpke et al.   PLoS One

Energy conservation via electron bifurcating ferredoxin reduction and proton/Na+ translocating ferredoxin oxidation

(2012) Wolfgang Buckel et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS

Commercial Biomass Syngas Fermentation

(2012) James Daniell et al.   Energies

Fuel and chemical products from biomass syngas: A comparison of gas fermentation to thermochemical conversion routes

(2012) Derek W. Griffin et al.   Environmental Progress & Sustainable Energy

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

(2012) Cole Trapnell et al.   Nature Protocols

2,3-Butanediol Production by Acetogenic Bacteria, an Alternative Route to Chemical Synthesis, Using Industrial Waste Gas

(2011) Michael Köpke et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Fermentative production of ethanol from carbon monoxide

(2011) Michael Köpke et al.   CURRENT OPINION IN BIOTECHNOLOGY

Clostridia: the importance of their exceptional substrate and metabolite diversity for biofuel and biorefinery applications

(2011) Bryan P Tracy et al.   CURRENT OPINION IN BIOTECHNOLOGY

Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox v2.0

(2011) Jan Schellenberger et al.   Nature Protocols

NADP+ Reduction with Reduced Ferredoxin and NADP+ Reduction with NADH Are Coupled via an Electron-Bifurcating Enzyme Complex in Clostridium kluyveri

(2010) S. Wang et al.   JOURNAL OF BACTERIOLOGY

High-throughput generation, optimization and analysis of genome-scale metabolic models

(2010) Christopher S Henry et al.   NATURE BIOTECHNOLOGY

What is flux balance analysis?

(2010) Jeffrey D Orth et al.   NATURE BIOTECHNOLOGY

AraGEM, a Genome-Scale Reconstruction of the Primary Metabolic Network in Arabidopsis

(2010) C. G. de Oliveira Dal'Molin et al.   PLANT PHYSIOLOGY

Clostridium ljungdahlii represents a microbial production platform based on syngas

(2010) M. Kopke et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Bacterial Na+-translocating ferredoxin:NAD+ oxidoreductase

(2010) E. Biegel et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Quantitative analysis of intracellular sugar phosphates and sugar nucleotides in encapsulated streptococci using HPAEC-PAD

(2009) Esteban Marcellin et al.   Biotechnology Journal

The ClosTron: Mutagenesis in Clostridium refined and streamlined

(2009) John T. Heap et al.   JOURNAL OF MICROBIOLOGICAL METHODS

Discovery of a Ferredoxin:NAD+-Oxidoreductase (Rnf) in Acetobacterium woodii

(2008) Volker Müller et al.   Annals of the New York Academy of Sciences

Ethanol and acetate production by Clostridium ljungdahlii and Clostridium autoethanogenum using resting cells

(2008) Jacqueline L. Cotter et al.   BIOPROCESS AND BIOSYSTEMS ENGINEERING

The genome of Clostridium kluyveri, a strict anaerobe with unique metabolic features

(2008) H. Seedorf et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA