Merging DNA metabarcoding and ecological network analysis to understand and build resilient terrestrial ecosystems

Environmental DNA – An emerging tool in conservation for monitoring past and present biodiversity

(2015) Philip Francis Thomsen et al.   BIOLOGICAL CONSERVATION

Determining Plant – Leaf Miner – Parasitoid Interactions: A DNA Barcoding Approach

(2015) Stéphane A. P. Derocles et al.   PLoS One

The restoration of tropical seed dispersal networks

(2015) Fernanda Ribeiro da Silva et al.   RESTORATION ECOLOGY

Inferring biotic interactions from proxies

(2015) Ignacio Morales-Castilla et al.   TRENDS IN ECOLOGY & EVOLUTION

Biodiversity and Resilience of Ecosystem Functions

(2015) Tom H. Oliver et al.   TRENDS IN ECOLOGY & EVOLUTION

What do molecular methods bring to host–parasitoid food webs?

(2015) Jan Hrček et al.   TRENDS IN PARASITOLOGY

Relative impacts of environmental variation and evolutionary history on the nestedness and modularity of tree-herbivore networks

(2015) Kathryn M. Robinson et al.   Ecology and Evolution

Integrating network ecology with applied conservation: a synthesis and guide to implementation

(2015) Christopher N. Kaiser-Bunbury et al.   AoB Plants

Ash dieback in the UK: A review of the ecological and conservation implications and potential management options

(2014) R.J. Mitchell et al.   BIOLOGICAL CONSERVATION

A simple stochastic model for complex coextinctions in mutualistic networks: robustness decreases with connectance

(2014) Marcos Costa Vieira et al.   ECOLOGY LETTERS

Molecular detection of trophic interactions: emerging trends, distinct advantages, significant considerations and conservation applications

(2014) Elizabeth L. Clare   Evolutionary Applications

Molecular analysis reveals high compartmentalization in aphid-primary parasitoid networks and low parasitoid sharing between crop and noncrop habitats

(2014) Stephane A. P. Derocles et al.   MOLECULAR ECOLOGY

Tree diversity alters the structure of a tri-trophic network in a biodiversity experiment

(2014) Michael Staab et al.   OIKOS

Complementary molecular information changes our perception of food web structure

(2014) Helena K. Wirta et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

From barcoding single individuals to metabarcoding biological communities: towards an integrative approach to the study of global biodiversity

(2014) Melania E. Cristescu   TRENDS IN ECOLOGY & EVOLUTION

Assembly of complex plant–fungus networks

(2014) Hirokazu Toju et al.   Nature Communications

Evolutionary History and Ecological Processes Shape a Local Multilevel Antagonistic Network

(2013) Marianne Elias et al.   CURRENT BIOLOGY

Phylogenetic trait-based analyses of ecological networks

(2013) Nicole E. Rafferty et al.   ECOLOGY

The robustness of a network of ecological networks to habitat loss

(2013) Darren M. Evans et al.   ECOLOGY LETTERS

Reliable, verifiable and efficient monitoring of biodiversity via metabarcoding

(2013) Yinqiu Ji et al.   ECOLOGY LETTERS

A new versatile primer set targeting a short fragment of the mitochondrial COI region for metabarcoding metazoan diversity: application for characterizing coral reef fish gut contents

(2013) Matthieu Leray et al.   Frontiers in Zoology

Logging and forest edges reduce redundancy in plant-frugivore networks in an old-growth European forest

(2013) Jörg Albrecht et al.   JOURNAL OF ECOLOGY

Diet of the insectivorous batPipistrellus nathusiiduring autumn migration and summer residence

(2013) Frauke Krüger et al.   MOLECULAR ECOLOGY

Molecular characterization of trophic ecology within an island radiation of insect herbivores (Curculionidae: Entiminae:Cratopus)

(2013) James J. N. Kitson et al.   MOLECULAR ECOLOGY

A pragmatic approach to the analysis of diets of generalist predators: the use of next-generation sequencing with no blocking probes

(2013) J. Piñol et al.   Molecular Ecology Resources

Arbuscular Mycorrhizal Fungal Networks Vary throughout the Growing Season and between Successional Stages

(2013) Alison Elizabeth Bennett et al.   PLoS One

Secondary extinctions in food webs: a Bayesian network approach

(2013) Anna Eklöf et al.   Methods in Ecology and Evolution

More than a meal… integrating non-feeding interactions into food webs

(2012) Sonia Kéfi et al.   ECOLOGY LETTERS

Detection of a Diverse Marine Fish Fauna Using Environmental DNA from Seawater Samples

(2012) Philip Francis Thomsen et al.   PLoS One

The Robustness and Restoration of a Network of Ecological Networks

(2012) M. J. O. Pocock et al.   SCIENCE

Emerging perspectives in the restoration of biodiversity-based ecosystem services

(2012) Daniel Montoya et al.   TRENDS IN ECOLOGY & EVOLUTION

Food webs: reconciling the structure and function of biodiversity

(2012) Ross M. Thompson et al.   TRENDS IN ECOLOGY & EVOLUTION

Ecological genetics of invasive alien species

(2011) L.-J. Lawson Handley et al.   BIOCONTROL

Seeds in farmland food-webs: Resource importance, distribution and the impacts of farm management

(2011) Darren M. Evans et al.   BIOLOGICAL CONSERVATION

Evolution and coevolution in mutualistic networks

(2011) Paulo R. Guimarães Jr et al.   ECOLOGY LETTERS

The ecological and evolutionary implications of merging different types of networks

(2011) Colin Fontaine et al.   ECOLOGY LETTERS

Choosing and Using a Plant DNA Barcode

(2011) Peter M. Hollingsworth et al.   PLoS One

Performance, Accuracy, and Web Server for Evolutionary Placement of Short Sequence Reads under Maximum Likelihood

(2011) Simon A. Berger et al.   SYSTEMATIC BIOLOGY

How to monitor ecological communities cost-efficiently: The example of plant–pollinator networks

(2010) Stein Joar Hegland et al.   BIOLOGICAL CONSERVATION

pplacer: linear time maximum-likelihood and Bayesian phylogenetic placement of sequences onto a fixed reference tree

(2010) Frederick A Matsen et al.   BMC BIOINFORMATICS

The robustness of pollination networks to the loss of species and interactions: a quantitative approach incorporating pollinator behaviour

(2010) Christopher N. Kaiser-Bunbury et al.   ECOLOGY LETTERS

Structural dynamics and robustness of food webs

(2010) Phillip P. A. Staniczenko et al.   ECOLOGY LETTERS

Multiplex reactions for the molecular detection of predation on pest and nonpest invertebrates in agroecosystems

(2010) R. ANDREW KING et al.   Molecular Ecology Resources

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Sampling method influences the structure of plant-pollinator networks

(2010) Rachel H. Gibson et al.   OIKOS

Evaluating multiple determinants of the structure of plant–animal mutualistic networks

(2009) Diego P. Vázquez et al.   ECOLOGY

The temporal dynamics of resource use by frugivorous birds: a network approach

(2009) Jofre Carnicer et al.   ECOLOGY

Progress towards DNA barcoding of fungi

(2009) KEITH A. SEIFERT   Molecular Ecology Resources

Keystone species and food webs

(2009) F. Jordan   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Disentangling the Web of Life

(2009) Jordi Bascompte   SCIENCE

Googling Food Webs: Can an Eigenvector Measure Species' Importance for Coextinctions?

(2009) Stefano Allesina et al.   PLoS Computational Biology

Global change and species interactions in terrestrial ecosystems

(2008) Jason M. Tylianakis et al.   ECOLOGY LETTERS

Adaptation, migration or extirpation: climate change outcomes for tree populations

(2008) Sally N. Aitken et al.   Evolutionary Applications

Success and its limits among structural models of complex food webs

(2008) Richard J. Williams et al.   JOURNAL OF ANIMAL ECOLOGY

Review: Ecological networks - beyond food webs

(2008) Thomas C. Ings et al.   JOURNAL OF ANIMAL ECOLOGY

Mountain pine beetle and forest carbon feedback to climate change

(2008) W. A. Kurz et al.   NATURE

A consistent metric for nestedness analysis in ecological systems: reconciling concept and measurement

(2008) Mário Almeida-Neto et al.   OIKOS

A General Model for Food Web Structure

(2008) S. Allesina et al.   SCIENCE