The exoribonuclease Xrn1 is a post-transcriptional negative regulator of autophagy

PLA2G16 represents a switch between entry and clearance of Picornaviridae

(2017) Jacqueline Staring et al.   NATURE

Emerging connections between RNA and autophagy

(2016) Lisa B. Frankel et al.   Autophagy

Guidelines for the use and interpretation of assays for monitoring autophagy (3rd edition)

(2016) Daniel J Klionsky et al.   Autophagy

The roles of the exoribonucleases DIS3L2 and XRN1 in human disease

(2016) Amy L. Pashler et al.   BIOCHEMICAL SOCIETY TRANSACTIONS

Cytoplasmic RNA decay pathways - Enzymes and mechanisms

(2016) Anna Łabno et al.   BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR CELL RESEARCH

Nonsense-Mediated Decay Restricts LncRNA Levels in Yeast Unless Blocked by Double-Stranded RNA Structure

(2016) Maxime Wery et al.   MOLECULAR CELL

Zika virus produces noncoding RNAs using a multi-pseudoknot structure that confounds a cellular exonuclease

(2016) B. M. Akiyama et al.   SCIENCE

XRN1 Is a Species-Specific Virus Restriction Factor in Yeasts

(2016) Paul A. Rowley et al.   PLoS Pathogens

A large-scale analysis of autophagy-related gene expression identifies new regulators of autophagy

(2015) Amélie Bernard et al.   Autophagy

Atg41/Icy2 regulates autophagosome formation

(2015) Zhiyuan Yao et al.   Autophagy

RIP3 Regulates Autophagy and Promotes Coxsackievirus B3 Infection of Intestinal Epithelial Cells

(2015) Katharine G. Harris et al.   Cell Host & Microbe

Rph1/KDM4 Mediates Nutrient-Limitation Signaling that Leads to the Transcriptional Induction of Autophagy

(2015) Amélie Bernard et al.   CURRENT BIOLOGY

Regulation of Hepatitis C Virus Genome Replication by Xrn1 and MicroRNA-122 Binding to Individual Sites in the 5′ Untranslated Region

(2015) Patricia A. Thibault et al.   JOURNAL OF VIROLOGY

Assays for the biochemical and ultrastructural measurement of selective and nonselective types of autophagy in the yeast Saccharomyces cerevisiae

(2015) Rodrigo Soares Guimaraes et al.   METHODS

The yeast Saccharomyces cerevisiae: An overview of methods to study autophagy progression

(2015) Elizabeth Delorme-Axford et al.   METHODS

A conserved mechanism of TOR-dependent RCK-mediated mRNA degradation regulates autophagy

(2015) Guowu Hu et al.   NATURE CELL BIOLOGY

How to control self-digestion: transcriptional, post-transcriptional, and post-translational regulation of autophagy

(2015) Yuchen Feng et al.   TRENDS IN CELL BIOLOGY

Viruses and the autophagy pathway

(2015) William T. Jackson   VIROLOGY

Cytoplasmic Control of Sense-Antisense mRNA Pairs

(2015) Flore Sinturel et al.   Cell Reports

Catch Me If You Can: The Link between Autophagy and Viruses

(2015) Nicholas J. Lennemann et al.   PLoS Pathogens

Quantitative regulation of vesicle formation in yeast non-specific autophagy

(2014) Jiefei Geng et al.   Autophagy

Regulation of autophagy by a beclin 1-targeted microRNA, miR-30a, in cancer cells

(2014) Hua Zhu et al.   Autophagy

Transcriptional Regulation by Pho23 Modulates the Frequency of Autophagosome Formation

(2014) Meiyan Jin et al.   CURRENT BIOLOGY

Regulation of autophagy: Modulation of the size and number of autophagosomes

(2014) Meiyan Jin et al.   FEBS LETTERS

Nonlytic viral spread enhanced by autophagy components

(2014) S. W. Bird et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Noncoding Subgenomic Flavivirus RNA: Multiple Functions in West Nile Virus Pathogenesis and Modulation of Host Responses

(2014) Justin Roby et al.   Viruses-Basel

BPIFB3 Regulates Autophagy and Coxsackievirus B Replication through a Noncanonical Pathway Independent of the Core Initiation Machinery

(2014) Elizabeth Delorme-Axford et al.   mBio

RNA structures that resist degradation by Xrn1 produce a pathogenic Dengue virus RNA

(2014) Erich G Chapman et al.   eLife

Cytoplasmic 5′-3′ exonuclease Xrn1p is also a genome-wide transcription factor in yeast

(2014) Daniel A. Medina et al.   Frontiers in Genetics

Estimating the size and number of autophagic bodies by electron microscopy

(2013) Steven K Backues et al.   Autophagy

XRN 5′→3′ exoribonucleases: Structure, mechanisms and functions

(2013) Vinay K. Nagarajan et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

Gene Expression Is Circular: Factors for mRNA Degradation Also Foster mRNA Synthesis

(2013) Gal Haimovich et al.   CELL

How Positive-Strand RNA Viruses Benefit from Autophagosome Maturation

(2013) A. L. Richards et al.   JOURNAL OF VIROLOGY

Lipid Raft- and Src Family Kinase-Dependent Entry of Coxsackievirus B into Human Placental Trophoblasts

(2013) E. Delorme-Axford et al.   JOURNAL OF VIROLOGY

Global Analysis of Eukaryotic mRNA Degradation Reveals Xrn1-Dependent Buffering of Transcript Levels

(2013) Mai Sun et al.   MOLECULAR CELL

Genome engineering using the CRISPR-Cas9 system

(2013) F Ann Ran et al.   Nature Protocols

The return of the nucleus: transcriptional and epigenetic control of autophagy

(2013) Jens Füllgrabe et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Human placental trophoblasts confer viral resistance to recipient cells

(2013) E. Delorme-Axford et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

RNA Degradation in Saccharomyces cerevisae

(2012) Roy Parker   GENETICS

Inhibition of Cellular Autophagy Deranges Dengue Virion Maturation

(2012) Roberto Mateo et al.   JOURNAL OF VIROLOGY

Decapping of Long Noncoding RNAs Regulates Inducible Genes

(2012) Sarah Geisler et al.   MOLECULAR CELL

Ume6 transcription factor is part of a signaling cascade that regulates autophagy

(2012) C. R. Bartholomew et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

P-Bodies and Stress Granules: Possible Roles in the Control of Translation and mRNA Degradation

(2012) C. J. Decker et al.   Cold Spring Harbor Perspectives in Biology

Intracellular Vesicle Acidification Promotes Maturation of Infectious Poliovirus Particles

(2012) Alexsia L. Richards et al.   PLoS Pathogens

The 5′ → 3′ exoribonuclease XRN1/Pacman and its functions in cellular processes and development

(2012) Christopher Iain Jones et al.   Wiley Interdisciplinary Reviews-RNA

FastCloning: a highly simplified, purification-free, sequence- and ligation-independent PCR cloning method

(2011) Chaokun Li et al.   BMC BIOTECHNOLOGY

Hepatitis C Virus Hijacks P-Body and Stress Granule Components around Lipid Droplets

(2011) Y. Ariumi et al.   JOURNAL OF VIROLOGY

XUTs are a class of Xrn1-sensitive antisense regulatory non-coding RNA in yeast

(2011) E. L. van Dijk et al.   NATURE

On track with P-bodies

(2010) Meeta Kulkarni et al.   BIOCHEMICAL SOCIETY TRANSACTIONS

Methods in Mammalian Autophagy Research

(2010) Noboru Mizushima et al.   CELL

RNA Structures Required for Production of Subgenomic Flavivirus RNA

(2010) A. Funk et al.   JOURNAL OF VIROLOGY

Coxsackievirus Infection Induces Autophagy-Like Vesicles and Megaphagosomes in Pancreatic Acinar Cells In Vivo

(2010) C. C. Kemball et al.   JOURNAL OF VIROLOGY

Poliovirus-Mediated Disruption of Cytoplasmic Processing Bodies

(2010) J. D. Dougherty et al.   JOURNAL OF VIROLOGY

Regulation Mechanisms and Signaling Pathways of Autophagy

(2009) Congcong He et al.   Annual Review of Genetics

PLIC proteins or ubiquilins regulate autophagy-dependent cell survival during nutrient starvation

(2009) Elsa-Noah N'Diaye et al.   EMBO REPORTS

Co-translational mRNA decay in Saccharomyces cerevisiae

(2009) Wenqian Hu et al.   NATURE

RNAi in Budding Yeast

(2009) I. A. Drinnenberg et al.   SCIENCE

A Highly Structured, Nuclease-Resistant, Noncoding RNA Produced by Flaviviruses Is Required for Pathogenicity

(2008) Gorben P. Pijlman et al.   Cell Host & Microbe

GFP-like Proteins Stably Accumulate in Lysosomes

(2008) Hiroyuki Katayama et al.   CELL STRUCTURE AND FUNCTION

20S RNA Narnavirus Defies the Antiviral Activity ofSKI1/XRN1inSaccharomyces cerevisiae

(2008) Rosa Esteban et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Autophagosome Supports Coxsackievirus B3 Replication in Host Cells

(2008) J. Wong et al.   JOURNAL OF VIROLOGY

Atg8 Controls Phagophore Expansion during Autophagosome Formation

(2008) Zhiping Xie et al.   MOLECULAR BIOLOGY OF THE CELL