A current view on long noncoding RNAs in yeast and filamentous fungi

A long noncoding RNA promotes cellulase expression in Trichoderma reesei

(2018) Petra Till et al.   Biotechnology for Biofuels

A long noncoding (lnc)RNA governs expression of the phosphate transporter Pho84 in fission yeast and has cascading effects on the flankingprtlncRNA andpho1genes

(2018) Angad Garg et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

An atlas of human long non-coding RNAs with accurate 5′ ends

(2017) Chung-Chau Hon et al.   NATURE

Poly(A) site choice and Pol2 CTD Serine-5 status govern lncRNA control of phosphate-responsive tgp1 gene expression in fission yeast

(2017) Ana M. Sanchez et al.   RNA

Native elongating transcript sequencing reveals global anti-correlation between sense and antisense nascent transcription in fission yeast

(2017) Maxime Wery et al.   RNA

The long non-coding RNA world in yeasts

(2016) Akira Yamashita et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

Functional characterisation of long intergenic non-coding RNAs through genetic interaction profiling in Saccharomyces cerevisiae

(2016) Dimitris Kyriakou et al.   BMC BIOLOGY

Transcription of the mating-type-regulated lncRNA IRT1 is governed by TORC1 and PKA

(2016) Fabien Moretto et al.   CURRENT GENETICS

RNA decay systems enhance reciprocal switching of sense and antisense transcripts in response to glucose starvation

(2016) Atsuko Miki et al.   GENES TO CELLS

Nonsense-Mediated Decay Restricts LncRNA Levels in Yeast Unless Blocked by Double-Stranded RNA Structure

(2016) Maxime Wery et al.   MOLECULAR CELL

Local potentiation of stress-responsive genes by upstream noncoding transcription

(2016) Naomichi Takemata et al.   NUCLEIC ACIDS RESEARCH

Disruption of promoter memory by synthesis of a long noncoding RNA

(2016) Yaxin Yu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Transcription of lncRNAprt, clusteredprtRNA sites for Mmi1 binding, and RNA polymerase II CTD phospho-sites govern the repression ofpho1gene expression under phosphate-replete conditions in fission yeast

(2016) Debashree Chatterjee et al.   RNA

Protein Abundance Control by Non-coding Antisense Transcription

(2016) Florian Huber et al.   Cell Reports

Non-coding transcription by RNA polymerase II in yeast: Hasard or nécessité?

(2015) Agnieszka Tudek et al.   BIOCHIMIE

The landscape of long noncoding RNAs in the human transcriptome

(2015) Matthew K Iyer et al.   NATURE GENETICS

Telomeric repeat-containing RNA TERRA: a noncoding RNA connecting telomere biology to genome integrity

(2015) Emilio Cusanelli et al.   Frontiers in Genetics

lncRNA recruits RNAi and the exosome to dynamically regulate pho1 expression in response to phosphate levels in fission yeast

(2014) S. Shah et al.   GENES & DEVELOPMENT

Control of Cdc28 CDK1 by a Stress-Induced lncRNA

(2014) Mariona Nadal-Ribelles et al.   MOLECULAR CELL

Transcriptional regulatory functions of nuclear long noncoding RNAs

(2014) Keith W. Vance et al.   TRENDS IN GENETICS

A global non-coding RNA system modulates fission yeast protein levels in response to stress

(2014) Hui Sun Leong et al.   Nature Communications

Long non-coding RNA-mediated transcriptional interference of a permease gene confers drug tolerance in fission yeast

(2014) Ryan Ard et al.   Nature Communications

Translation of Small Open Reading Frames within Unannotated RNA Transcripts in Saccharomyces cerevisiae

(2014) Jenna E. Smith et al.   Cell Reports

Meiotic long non-coding meiRNA accumulates as a dot at its genetic locus facilitated by Mmi1 and plays as a decoy to lure Mmi1

(2014) Y. Shichino et al.   Open Biology

XRN 5′→3′ exoribonucleases: Structure, mechanisms and functions

(2013) Vinay K. Nagarajan et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

Gene regulation by the act of long non-coding RNA transcription

(2013) Aleksandra E Kornienko et al.   BMC BIOLOGY

Transcriptome Surveillance by Selective Termination of Noncoding RNA Synthesis

(2013) Daniel Schulz et al.   CELL

Long noncoding RNA-based chromatin control of germ cell differentiation: a yeast perspective

(2013) Edwige Hiriart et al.   CHROMOSOME RESEARCH

Emerging trends of long non-coding RNAs in gene activation

(2013) Jaya Krishnan et al.   FEBS Journal

A conserved ncRNA-binding protein recruits silencing factors to heterochromatin through an RNAi-independent mechanism

(2013) D. B. Marina et al.   GENES & DEVELOPMENT

Stress-induced lncRNAs evade nuclear degradation and enter the translational machinery

(2013) Josephine Galipon et al.   GENES TO CELLS

Structure and function of long noncoding RNAs in epigenetic regulation

(2013) Tim R Mercer et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Non-coding RNAs inSaccharomyces cerevisiae: what is the function?

(2012) Jian Wu et al.   BIOCHEMICAL SOCIETY TRANSACTIONS

Transcription of Two Long Noncoding RNAs Mediates Mating-Type Control of Gametogenesis in Budding Yeast

(2012) Folkert J. van Werven et al.   CELL

Mmi1 RNA surveillance machinery directs RNAi complex RITS to specific meiotic genes in fission yeast

(2012) Edwige Hiriart et al.   EMBO JOURNAL

The GENCODE v7 catalog of human long noncoding RNAs: Analysis of their gene structure, evolution, and expression

(2012) T. Derrien et al.   GENOME RESEARCH

Single-Cell Analysis Reveals that Noncoding RNAs Contribute to Clonal Heterogeneity by Modulating Transcription Factor Recruitment

(2012) Stacie L. Bumgarner et al.   MOLECULAR CELL

Decapping of Long Noncoding RNAs Regulates Inducible Genes

(2012) Sarah Geisler et al.   MOLECULAR CELL

Long Noncoding RNAs with snoRNA Ends

(2012) Qing-Fei Yin et al.   MOLECULAR CELL

Landscape of transcription in human cells

(2012) Sarah Djebali et al.   NATURE

Meiosis-Specific Noncoding RNA Mediates Robust Pairing of Homologous Chromosomes in Meiosis

(2012) D.-Q. Ding et al.   SCIENCE

Hexanucleotide motifs mediate recruitment of the RNA elimination machinery to silent meiotic genes

(2012) A. Yamashita et al.   Open Biology

The majority of total nuclear-encoded non-ribosomal RNA in a human cell is 'dark matter' un-annotated RNA

(2011) Philipp Kapranov et al.   BMC BIOLOGY

Regulated Antisense Transcription Controls Expression of Cell-Type-Specific Genes in Yeast

(2011) B. Gelfand et al.   MOLECULAR AND CELLULAR BIOLOGY

XUTs are a class of Xrn1-sensitive antisense regulatory non-coding RNA in yeast

(2011) E. L. van Dijk et al.   NATURE

Genome-wide measurement of RNA secondary structure in yeast

(2010) Michael Kertesz et al.   NATURE

Intragenic transcription of a noncoding RNA modulates expression of ASP3 in budding yeast

(2010) Y.-C. Huang et al.   RNA

Evolution and Functions of Long Noncoding RNAs

(2009) Chris P. Ponting et al.   CELL

TERRA: telomeric repeat-containing RNA

(2009) Brian Luke et al.   EMBO JOURNAL

Trans-acting antisense RNAs mediate transcriptional gene cosuppression in S. cerevisiae

(2009) J. Camblong et al.   GENES & DEVELOPMENT

Toggle involving cis-interfering noncoding RNAs controls variegated gene expression in yeast

(2009) S. L. Bumgarner et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Epigenetic and Conventional Regulation Is Distributed among Activators of FLO11 Allowing Tuning of Population-Level Heterogeneity in Its Expression

(2009) Leah M. Octavio et al.   PLoS Genetics

A cryptic unstable transcript mediates transcriptional trans-silencing of the Ty1 retrotransposon in S. cerevisiae

(2008) J. Berretta et al.   GENES & DEVELOPMENT

A ncRNA Modulates Histone Modification and mRNA Induction in the Yeast GAL Gene Cluster

(2008) Jonathan Houseley et al.   MOLECULAR CELL

The Rat1p 5′ to 3′ Exonuclease Degrades Telomeric Repeat-Containing RNA and Promotes Telomere Elongation in Saccharomyces cerevisiae

(2008) Brian Luke et al.   MOLECULAR CELL

Stepwise chromatin remodelling by a cascade of transcription initiation of non-coding RNAs

(2008) Kouji Hirota et al.   NATURE

Dynamic repertoire of a eukaryotic transcriptome surveyed at single-nucleotide resolution

(2008) Brian T. Wilhelm et al.   NATURE

Dynamic transcriptome of Schizosaccharomyces pombe shown by RNA-DNA hybrid mapping

(2008) Natalie Dutrow et al.   NATURE GENETICS

The Transcriptional Landscape of the Yeast Genome Defined by RNA Sequencing

(2008) U. Nagalakshmi et al.   SCIENCE