Co-cultivation of the strictly anaerobic methanogen Methanosarcina barkeri with aerobic methanotrophs in an oxygen-limited membrane bioreactor

Anaerobic oxidation of methane by aerobic methanotrophs in sub-Arctic lake sediments

(2017) Karla Martinez-Cruz et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Methanogenesis in oxygenated soils is a substantial fraction of wetland methane emissions

(2017) Jordan C. Angle et al.   Nature Communications

BinSanity: unsupervised clustering of environmental microbial assemblies using coverage and affinity propagation

(2017) Elaina D. Graham et al.   PeerJ

Nutrient and acetate amendment leads to acetoclastic methane production and microbial community change in a non-producing Australian coal well

(2017) Michiel H. in 't Zandt et al.   Microbial Biotechnology

COCACOLA: binning metagenomic contigs using sequence COmposition, read CoverAge, CO-alignment and paired-end read LinkAge

(2016) Yang Young Lu et al.   BIOINFORMATICS

Aerobic gammaproteobacterial methanotrophs mitigate methane emissions from oxic and anoxic lake waters

(2016) Kirsten Oswald et al.   LIMNOLOGY AND OCEANOGRAPHY

MaxBin 2.0: an automated binning algorithm to recover genomes from multiple metagenomic datasets

(2015) Yu-Wei Wu et al.   BIOINFORMATICS

Methane oxidation coupled to nitrate reduction under hypoxia by the GammaproteobacteriumMethylomonas denitrificans, sp. nov. type strain FJG1

(2015) K. Dimitri Kits et al.   ENVIRONMENTAL MICROBIOLOGY

CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes

(2015) Donovan H. Parks et al.   GENOME RESEARCH

Archaeal and bacterial communities across a chronosequence of drained lake basins in arctic alaska

(2015) J. Kao-Kniffin et al.   Scientific Reports

MetaBAT, an efficient tool for accurately reconstructing single genomes from complex microbial communities

(2015) Dongwan D. Kang et al.   PeerJ

Prokka: rapid prokaryotic genome annotation

(2014) T. Seemann   BIOINFORMATICS

Methane dynamics regulated by microbial community response to permafrost thaw

(2014) Carmody K. McCalley et al.   NATURE

Binning metagenomic contigs by coverage and composition

(2014) Johannes Alneberg et al.   NATURE METHODS

Oxic water column methanogenesis as a major component of aquatic CH4 fluxes

(2014) Matthew J Bogard et al.   Nature Communications

Stable Isotopes Reveal Widespread Anaerobic Methane Oxidation Across Latitude and Peatland Type

(2013) Varun Gupta et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Anaerobic oxidation of methane coupled to nitrate reduction in a novel archaeal lineage

(2013) Mohamed F. Haroon et al.   NATURE

Methane-cycling communities in a permafrost-affected soil on Herschel Island, Western Canadian Arctic: active layer profiling ofmcrAandpmoAgenes

(2012) Béatrice A. Barbier et al.   FEMS MICROBIOLOGY ECOLOGY

Reactive greenhouse gas scenarios: Systematic exploration of uncertainties and the role of atmospheric chemistry

(2012) Michael J. Prather et al.   GEOPHYSICAL RESEARCH LETTERS

Methane emissions from wetlands: biogeochemical, microbial, and modeling perspectives from local to global scales

(2012) Scott D. Bridgham et al.   GLOBAL CHANGE BIOLOGY

Predicting long-term carbon mineralization and trace gas production from thawing permafrost of Northeast Siberia

(2012) Christian Knoblauch et al.   GLOBAL CHANGE BIOLOGY

Co-occurrence of nitrite-dependent anaerobic methane oxidizing and anaerobic ammonia oxidizing bacteria in two Qinghai-Tibetan saline lakes

(2012) Jian Yang et al.   Frontiers of Earth Science

Metagenomic analysis of a permafrost microbial community reveals a rapid response to thaw

(2011) Rachel Mackelprang et al.   NATURE

Fast and accurate long-read alignment with Burrows–Wheeler transform

(2010) Heng Li et al.   BIOINFORMATICS

Methylocapsa aurea sp. nov., a facultative methanotroph possessing a particulate methane monooxygenase, and emended description of the genus Methylocapsa

(2010) P. F. Dunfield et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Molecular analysis of high-affinity methane-oxidizing enrichment cultures isolated from a forest biocenosis and agrocenoses

(2010) I. K. Kravchenko et al.   MICROBIOLOGY

Nitrite-driven anaerobic methane oxidation by oxygenic bacteria

(2010) Katharina F. Ettwig et al.   NATURE

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS