Patterns of Wnt signaling in the life cycle ofPodocoryna carneaand its implications for medusae evolution in Hydrozoa (Cnidaria)

Expression of Wnt pathway genes in polyps and medusa-like structures ofEctopleura larynx(Cnidaria: Hydrozoa)

(2015) Annalise M. Nawrocki et al.   EVOLUTION & DEVELOPMENT

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Differential gene expression between functionally specialized polyps of the colonial hydrozoan Hydractinia symbiolongicarpus (Phylum Cnidaria)

(2014) Steven M Sanders et al.   BMC GENOMICS

Lineage-specific evolution of cnidarian Wnt ligands

(2014) Katrin Hensel et al.   EVOLUTION & DEVELOPMENT

Differential Responses to Wnt and PCP Disruption Predict Expression and Developmental Function of Conserved and Novel Genes in a Cnidarian

(2014) Pascal Lapébie et al.   PLoS Genetics

EBSeq: an empirical Bayes hierarchical model for inference in RNA-seq experiments

(2013) Ning Leng et al.   BIOINFORMATICS

Data, information, knowledge and principle: back to metabolism in KEGG

(2013) Minoru Kanehisa et al.   NUCLEIC ACIDS RESEARCH

CD-HIT: accelerated for clustering the next-generation sequencing data

(2012) Limin Fu et al.   BIOINFORMATICS

EVOLUTION OF LIFE CYCLE, COLONY MORPHOLOGY, AND HOST SPECIFICITY IN THE FAMILY HYDRACTINIIDAE (HYDROZOA, CNIDARIA)

(2012) Maria Pia Miglietta et al.   EVOLUTION

The Conserved PHD1-PHD2 Domain of ZFP-1/AF10 Is a Discrete Functional Module Essential for Viability in Caenorhabditis elegans

(2012) D. C. Avgousti et al.   MOLECULAR AND CELLULAR BIOLOGY

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

(2011) Bo Li et al.   BMC BIOINFORMATICS

Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega

(2011) F. Sievers et al.   Molecular Systems Biology

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

The Pfam protein families database

(2011) M. Punta et al.   NUCLEIC ACIDS RESEARCH

Autoregulatory and repressive inputs localize Hydra Wnt3 to the head organizer

(2011) Y. Nakamura et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Wnt signaling promotes oral but suppresses aboral structures in Hydractinia metamorphosis and regeneration

(2010) D. J. Duffy et al.   DEVELOPMENT

β-catenin plays a central role in setting up the head organizer in hydra

(2010) Lydia Gee et al.   DEVELOPMENTAL BIOLOGY

Linking H3K79 trimethylation to Wnt signaling through a novel Dot1-containing complex (DotCom)

(2010) M. Mohan et al.   GENES & DEVELOPMENT

Character Evolution in Hydrozoa (phylum Cnidaria)

(2010) Paulyn Cartwright et al.   INTEGRATIVE AND COMPARATIVE BIOLOGY

The Leukemia-Associated Mllt10/Af10-Dot1l Are Tcf4/β-Catenin Coactivators Essential for Intestinal Homeostasis

(2010) Tokameh Mahmoudi et al.   PLOS BIOLOGY

Multiple Wnts are involved in Hydra organizer formation and regeneration

(2009) Tobias Lengfeld et al.   DEVELOPMENTAL BIOLOGY

Life cycle strategy, species richness and distribution in marine Hydrozoa (Cnidaria: Medusozoa)

(2009) Mark J. Gibbons et al.   JOURNAL OF BIOGEOGRAPHY

Wnt/ -Catenin and noncanonical Wnt signaling interact in tissue evagination in the simple eumetazoan Hydra

(2009) I. Philipp et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Molecular Phylogenetics of Thecata (Hydrozoa, Cnidaria) Reveals Long-Term Maintenance of Life History Traits despite High Frequency of Recent Character Changes

(2009) Lucas Leclère et al.   SYSTEMATIC BIOLOGY

Reconciling genealogical and morphological species in a worldwide study of the Family Hydractiniidae (Cnidaria, Hydrozoa)

(2009) Maria Pia Miglietta et al.   ZOOLOGICA SCRIPTA

Compagen, a comparative genomics platform for early branching metazoan animals, reveals early origins of genes regulating stem-cell differentiation

(2008) Georg Hemmrich et al.   BIOESSAYS

A maternally localised Wnt ligand required for axial patterning in the cnidarian Clytia hemisphaerica

(2008) T. Momose et al.   DEVELOPMENT

Three distinct RNA localization mechanisms contribute to oocyte polarity establishment in the cnidarian Clytia hemisphærica

(2008) Aldine Amiel et al.   DEVELOPMENTAL BIOLOGY

Phylogenetics of Hydroidolina (Hydrozoa: Cnidaria)

(2008) Paulyn Cartwright et al.   JOURNAL OF THE MARINE BIOLOGICAL ASSOCIATION OF THE UNITED KINGDOM

High-throughput functional annotation and data mining with the Blast2GO suite

(2008) S. Gotz et al.   NUCLEIC ACIDS RESEARCH

A Rapid Bootstrap Algorithm for the RAxML Web Servers

(2008) Alexandros Stamatakis et al.   SYSTEMATIC BIOLOGY

Ordered progression of nematogenesis from stem cells through differentiation stages in the tentacle bulb of Clytia hemisphaerica (Hydrozoa, Cnidaria)

(2007) Elsa Denker et al.   DEVELOPMENTAL BIOLOGY