Complex histories of repeated gene flow in Cameroon crater lake cichlids cast doubt on one of the clearest examples of sympatric speciation

Detection and Polarization of Introgression in a Five-Taxon Phylogeny

(2015) James B. Pease et al.   SYSTEMATIC BIOLOGY

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Novel trophic niches drive variable progress towards ecological speciation within an adaptive radiation of pupfishes

(2014) Christopher H. Martin et al.   MOLECULAR ECOLOGY

Genomic divergence in a ring species complex

(2014) Miguel Alcaide et al.   NATURE

The genomic substrate for adaptive radiation in African cichlid fish

(2014) David Brawand et al.   NATURE

The counterintuitive role of sexual selection in species maintenance and speciation

(2014) M. R. Servedio et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Sympatric incipient speciation of spiny mice Acomys at "Evolution Canyon," Israel

(2014) Y. Hadid et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The genomic landscape underlying phenotypic integrity in the face of gene flow in crows

(2014) J. W. Poelstra et al.   SCIENCE

Speciation and Introgression between Mimulus nasutus and Mimulus guttatus

(2014) Yaniv Brandvain et al.   PLoS Genetics

High-Throughput Genomic Data in Systematics and Phylogenetics

(2013) Emily Moriarty Lemmon et al.   Annual Review of Ecology Evolution and Systematics

Mapping of pigmentation QTL on an anchored genome assembly of the cichlid fish, Metriaclima zebra

(2013) Claire T O’Quin et al.   BMC GENOMICS

STRONG ASSORTATIVE MATING BY DIET, COLOR, SIZE, AND MORPHOLOGY BUT LIMITED PROGRESS TOWARD SYMPATRIC SPECIATION IN A CLASSIC EXAMPLE: CAMEROON CRATER LAKE CICHLIDS

(2013) Christopher H. Martin   EVOLUTION

RADseq underestimates diversity and introduces genealogical biases due to nonrandom haplotype sampling

(2013) B. Arnold et al.   MOLECULAR ECOLOGY

Stacks: an analysis tool set for population genomics

(2013) Julian Catchen et al.   MOLECULAR ECOLOGY

Crater Lake Apoyo Revisited - Population Genetics of an Emerging Species Flock

(2013) Matthias F. Geiger et al.   PLoS One

Mapping and Validation of the Major Sex-Determining Region in Nile Tilapia (Oreochromis niloticus L.) Using RAD Sequencing

(2013) Christos Palaiokostas et al.   PLoS One

Possible incipient sympatric ecological speciation in blind mole rats (Spalax)

(2013) Y. Hadid et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Molecular and fossil evidence place the origin of cichlid fishes long after Gondwanan rifting

(2013) M. Friedman et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Inferring Demographic History from a Spectrum of Shared Haplotype Lengths

(2013) Kelley Harris et al.   PLoS Genetics

Weak Disruptive Selection and Incomplete Phenotypic Divergence in Two Classic Examples of Sympatric Speciation: Cameroon Crater Lake Cichlids

(2012) Christopher H. Martin   AMERICAN NATURALIST

Ancient Admixture in Human History

(2012) N. Patterson et al.   GENETICS

Cost-effective, high-throughput DNA sequencing libraries for multiplexed target capture

(2012) N. Rohland et al.   GENOME RESEARCH

Population genomic signatures of divergent adaptation, gene flow and hybrid speciation in the rapid radiation of Lake Victoria cichlid fishes

(2012) I. Keller et al.   MOLECULAR ECOLOGY

Special features of RAD Sequencing data: implications for genotyping

(2012) John W. Davey et al.   MOLECULAR ECOLOGY

Ecological opportunity and sexual selection together predict adaptive radiation

(2012) Catherine E. Wagner et al.   NATURE

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Double Digest RADseq: An Inexpensive Method for De Novo SNP Discovery and Genotyping in Model and Non-Model Species

(2012) Brant K. Peterson et al.   PLoS One

Inference of Population Splits and Mixtures from Genome-Wide Allele Frequency Data

(2012) Joseph K. Pickrell et al.   PLoS Genetics

Repeated colonization and hybridization in Lake Malawi cichlids

(2011) Domino A. Joyce et al.   CURRENT BIOLOGY

Ecology, sexual selection and speciation

(2011) Martine E. Maan et al.   ECOLOGY LETTERS

Testing for Ancient Admixture between Closely Related Populations

(2011) Eric Y. Durand et al.   MOLECULAR BIOLOGY AND EVOLUTION

A Robust, Simple Genotyping-by-Sequencing (GBS) Approach for High Diversity Species

(2011) Robert J. Elshire et al.   PLoS One

Speciation with gene flow on Lord Howe Island

(2011) Alexander S. T. Papadopulos et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Magic traits in speciation: ‘magic’ but not rare?

(2011) Maria R. Servedio et al.   TRENDS IN ECOLOGY & EVOLUTION

STRUCTURE HARVESTER: a website and program for visualizing STRUCTURE output and implementing the Evanno method

(2011) Dent A. Earl et al.   Conservation Genetics Resources

Unexploited females and unreliable signals of male quality in a Malawi cichlid bower polymorphism

(2010) Christopher H. Martin   BEHAVIORAL ECOLOGY

Rapid sympatric ecological differentiation of crater lake cichlid fishes within historic times

(2010) Kathryn R Elmer et al.   BMC BIOLOGY

Ancient lakes revisited: from the ecology to the genetics of speciation

(2010) MELANIA E. CRISTESCU et al.   MOLECULAR ECOLOGY

Local variation and parallel evolution: morphological and genetic diversity across a species complex of neotropical crater lake cichlid fishes

(2010) K. R. Elmer et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

A Draft Sequence of the Neandertal Genome

(2010) R. E. Green et al.   SCIENCE

The root of the East African cichlid radiations

(2009) Julia Schwarzer et al.   BMC EVOLUTIONARY BIOLOGY

Ecological studies on crater lakes in West Cameroon Fishes of Barombi Mbo

(2009) Ethelwynn Trewavas et al.   JOURNAL OF ZOOLOGY

Reconstructing Indian population history

(2009) David Reich et al.   NATURE

Sequential Sympatric Speciation Across Trophic Levels

(2009) A. A. Forbes et al.   SCIENCE

A Genealogical Interpretation of Principal Components Analysis

(2009) Gil McVean   PLoS Genetics

Ecological predictions lead to the discovery of a benthic–limnetic sympatric species pair of threespine stickleback in Little Quarry Lake, British Columbia

(2008) J. L. Gow et al.   CANADIAN JOURNAL OF ZOOLOGY

IS A NEW AND GENERAL THEORY OF MOLECULAR SYSTEMATICS EMERGING?

(2008) Scott V. Edwards   EVOLUTION

Frequency-Dependent Selection and the Evolution of Assortative Mating

(2008) S. P. Otto et al.   GENETICS

Inference of Historical Changes in Migration Rate From the Lengths of Migrant Tracts

(2008) J. E. Pool et al.   GENETICS

What, if anything, is sympatric speciation?

(2008) B. M. FITZPATRICK et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Speciation through sensory drive in cichlid fish

(2008) Ole Seehausen et al.   NATURE