Sequence entropy of folding and the absolute rate of amino acid substitutions

Extensively Parameterized Mutation–Selection Models Reliably Capture Site-Specific Selective Constraint

(2016) Stephanie J. Spielman et al.   MOLECULAR BIOLOGY AND EVOLUTION

Local fitness landscape of the green fluorescent protein

(2016) Karen S. Sarkisyan et al.   NATURE

The tangled bank of amino acids

(2016) Richard A. Goldstein et al.   PROTEIN SCIENCE

A coarse-grained biophysical model of sequence evolution and the population size dependence of the speciation rate

(2015) Bhavin S. Khatri et al.   JOURNAL OF THEORETICAL BIOLOGY

Nonadaptive Amino Acid Convergence Rates Decrease over Time

(2015) Richard A. Goldstein et al.   MOLECULAR BIOLOGY AND EVOLUTION

Contingency and entrenchment in protein evolution under purifying selection

(2015) Premal Shah et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Penalized-Likelihood Method to Estimate the Distribution of Selection Coefficients from Phylogenetic Data

(2014) Asif U. Tamuri et al.   GENETICS

A Model of Substitution Trajectories in Sequence Space and Long-Term Protein Evolution

(2014) Dinara R. Usmanova et al.   MOLECULAR BIOLOGY AND EVOLUTION

Strong evidence for protein epistasis, weak evidence against it

(2014) D. D. Pollock et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Population Size Dependence of Fitness Effect Distribution and Substitution Rate Probed by Biophysical Model of Protein Thermostability

(2013) Richard A. Goldstein   Genome Biology and Evolution

Mutational effects on stability are largely conserved during protein evolution

(2013) O. Ashenberg et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

On the Statistical Interpretation of Site-Specific Variables in Phylogeny-Based Substitution Models

(2012) N. Rodrigue   GENETICS

Epistasis as the primary factor in molecular evolution

(2012) Michael S. Breen et al.   NATURE

Amino acid coevolution induces an evolutionary Stokes shift

(2012) D. D. Pollock et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Estimating the Distribution of Selection Coefficients from Phylogenetic Data Using Sitewise Mutation-Selection Models

(2011) A. U. Tamuri et al.   GENETICS

A biophysical protein folding model accounts for most mutational fitness effects in viruses

(2011) C. S. Wylie et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The evolution and evolutionary consequences of marginal thermostability in proteins

(2010) Richard A. Goldstein   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Statistical mechanics of convergent evolution in spatial patterning

(2009) B. S. Khatri et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Evidence for an ancient adaptive episode of convergent molecular evolution

(2009) T. A. Castoe et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Identifying Changes in Selective Constraints: Host Shifts in Influenza

(2009) Asif U. Tamuri et al.   PLoS Computational Biology

Understanding Protein Evolution: From Protein Physics to Darwinian Selection

(2007) Konstantin B. Zeldovich et al.   Annual Review of Physical Chemistry